PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017641.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 282aa    MW: 29286.1 Da    PI: 9.2728
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017641.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86.3e-3091150159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dg++WrKYGqK+ kg+++pr+YYrCt a +Cpv+kkv+r+a+d +++++tY g Hnh+
  Do017641.1  91 VNDGCQWRKYGQKVAKGNPCPRAYYRCTGApDCPVRKKVQRCAQDMSMLVTTYDGAHNHP 150
                 58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-3078150IPR003657WRKY domain
SuperFamilySSF1182904.71E-2685151IPR003657WRKY domain
PROSITE profilePS5081126.33786152IPR003657WRKY domain
SMARTSM007743.7E-3591151IPR003657WRKY domain
PfamPF031061.0E-2592150IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MNAIGARHDI DAKLQAHAGD DEVIATAGMA LGLRCDSGEP VRAVISGTKR QRAASSDDHG  60
GKKAVLPAPP PQQERRPDRV SFRARCSAAT VNDGCQWRKY GQKVAKGNPC PRAYYRCTGA  120
PDCPVRKKVQ RCAQDMSMLV TTYDGAHNHP LNPYAAAMAS AMLASAAAAA ASSSSSSAPR  180
DATTGGAGIA ARGRANEDAP LLARPVAMLP PQRYYSSSGA VAVSGALAAA SSQNVVPMAN  240
IMQEAVADPK FREAVMAAVA SYVGEQRGGR NIDDLLTLAP PC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21911531475WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo017641.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701689.11e-124probable WRKY transcription factor 31
TrEMBLA0A1E5VD970.0A0A1E5VD97_9POAL; Putative WRKY transcription factor 9
STRINGSi002295m1e-124(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143192226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-41WRKY DNA-binding protein 9