PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017609.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 601aa    MW: 62025.2 Da    PI: 8.5659
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017609.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-0593115123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ C+k F r  nL+ H r H
  Do017609.1  93 FVCEVCNKGFQREQNLQLHRRGH 115
                 89*******************88 PP
2zf-C2H211.60.00088170192123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC +C+k++  +s+ k H + +
  Do017609.1 170 WKCDKCSKRYAVQSDWKAHSKIC 192
                 58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.3E-692115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.49E-792115No hitNo description
SMARTSM003550.004193115IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.09493115IPR007087Zinc finger, C2H2
PfamPF121713.9E-593115IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.1E-4158191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.49E-7165190No hitNo description
SMARTSM00355140170190IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MAGSNSSAAA AAFFGIRDGD HQDQIKPLIS PQQQQLAAAL PGVAGAAAPT PTSGQGPSTA  60
PAQPPPKKKR TLPDPDAEVI ALSPKTLLAT NRFVCEVCNK GFQREQNLQL HRRGHNLPWK  120
LKQKNPLQAQ RRRVYLCPEP TCVHHDPARA LGDLTGIKKH FCRKHGEKKW KCDKCSKRYA  180
VQSDWKAHSK ICGTREYRCD CGTLFSRRDS FITHRAFCDA LAQESARLPP TSLSSLTGHL  240
YGPTSAGNMA LSLSQVGSHL TSTLQDGHHH HHPSPELLRL GATAGGSGSS IAARLDHLLS  300
PSGVSAFRAA PQAPASSAAF FLSAAAAAGQ DFGDDAGNVS HSFLQQTKPF HGLMQLPDLQ  360
GNGAGGPGGS APGLFNLGFF ANNGSSSGSS HEHASQGLMN NDQFSGGAGG GGAGGGSEAS  420
AAGIFGGNFV GGGDHVPTPG LYGGEQATML PQMSATALLQ KAAQMGSSAN GAASMFRGFV  480
GSSPHGRPAT LHMEQSEANL NDLMNSLAGG GVSAAGMFGG SNGGGSGAGM FDPRQLCDME  540
QEVKFGQGGG DMTRDFLGVG GGGIVRGIST PRGDHQSSSD MSSLEAEMNK SASSFNGGRM  600
P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34166232369Zinc finger protein JACKDAW
5b3h_F2e-34166232369Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1404416SGGAGGGGAGGGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo017609.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7548660.0AY754866.1 Zea mays INDETERMINATE-related protein 9 mRNA, complete cds.
GenBankBT0641200.0BT064120.1 Zea mays full-length cDNA clone ZM_BFc0139A11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824078.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_025824079.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_025824080.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_025824082.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_025824083.10.0protein indeterminate-domain 5, chloroplastic-like
TrEMBLA0A1E5W4N30.0A0A1E5W4N3_9POAL; Protein indeterminate-domain 4, chloroplastic
STRINGSb06g025550.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-105indeterminate(ID)-domain 12