PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do017566.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | TCP | ||||||||
Protein Properties | Length: 204aa MW: 21031.9 Da PI: 10.5997 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 109.8 | 3.9e-34 | 52 | 147 | 9 | 89 |
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssasnsssg..............k 89 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a +c+++ s ss++++ g + Do017566.1 52 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvFSCSSAPSTSSGAHPLLGkrpredqeppapapA 147 89*******************************************************999995555555555555544444444443444433330 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.4E-30 | 51 | 127 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.009 | 51 | 105 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MASRDAATFQ VYRPMPAPSP APAPAPISLA AAAPAGDVAA PVPKKASPGA GKDRHSKVNG 60 RGRRVRMPIV CAARVFQLTR ELGLKSDGQT IEWLLRQAEP SILAATGSGT TPAVFSCSSA 120 PSTSSGAHPL LGKRPREDQE PPAPAPAPFW ATLQAARPVA WGLSPAQEAA AQAYASVAAA 180 QQGHHLNLLS VLSGATRPSE EESR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do017566.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727696 | 1e-106 | KJ727696.1 Zea mays clone pUT5635 TCP transcription factor (TCP14) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976294.1 | 2e-89 | transcription factor PCF1 | ||||
Swissprot | Q9FMX2 | 2e-38 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A1E5V9B4 | 1e-140 | A0A1E5V9B4_9POAL; Transcription factor TCP7 | ||||
STRING | Si011076m | 8e-89 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 3e-36 | TCP family protein |