PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017527.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family CO-like
Protein Properties Length: 406aa    MW: 43779.7 Da    PI: 5.034
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017527.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.87.8e-07445540
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 C+ ++e++   +C+++   lC +C  + H+       Ht++
  Do017527.1  4 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                6*****************************657888889876 PP
2zf-B_box21.45e-074788540
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 C+++ ++++   C   +  lC++C  ++H+       H+ +
  Do017527.1 47 LCDRCASQPAMVRCIVENASLCQNCDWNGHSAgssdagHKKQ 88
                7*****************************657888888765 PP
3CCT63.85.2e-22349392144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Re a++RYkeK+ +RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  Do017527.1 349 RESAITRYKEKKMRRKFDKKIRYASRKARADVRKRVKGRFVKAG 392
                 9****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.94147IPR000315B-box-type zinc finger
SMARTSM003361.0E-10147IPR000315B-box-type zinc finger
CDDcd000219.96E-8447No hitNo description
PROSITE profilePS501198.5174390IPR000315B-box-type zinc finger
CDDcd000212.32E-44778No hitNo description
SMARTSM003362.64890IPR000315B-box-type zinc finger
PfamPF062035.4E-17349391IPR010402CCT domain
PROSITE profilePS5101715.309349391IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MGALCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC  60
IVENASLCQN CDWNGHSAGS SDAGHKKQTI NCYSGCPSSA ELSRIWSFVS DIPNVAPEPN  120
CEQGISMMSI SDSGVSNQDN AAGDNNLLDI ACATLMSDLD TCDKPLVGSS SGAGVNLLPL  180
ATDQTDGSVD STTPKVPYTP DKYMFSKDSI YEDFCVDDVD LAFENYEELF GSSHIQTEQL  240
FDDAGIDSYF GVKEVPAGNS TEQPKLVQPA NSNAVSADSG MSNPGLKGDS SVCIPARQAR  300
SSLSLSFSGL TGESSAGDHQ DCVVSSLLLM GEPPWQAPGH ESSIAGGSRE SAITRYKEKK  360
MRRKFDKKIR YASRKARADV RKRVKGRFVK AGEAYDYDPL SQTRSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo017527.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9627670.0EU962767.1 Zea mays clone 245350 CCT motif family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008658624.10.0uncharacterized protein LOC100282916 isoform X3
SwissprotQ9SSE51e-122COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A1E5VH690.0A0A1E5VH69_9POAL; Zinc finger protein CONSTANS-LIKE 9
STRINGGRMZM2G013398_P040.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-91CONSTANS-like 9