PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017490.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 349aa    MW: 37111 Da    PI: 6.3431
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017490.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-1395146155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N+ ++ Lr+l+P+    + ++ + a+i+  A+e++k+L+
  Do017490.1  95 QRMTHIAVERNRRRQMNEYLAVLRSLMPEV---YVQRGDQASIVGGAIEFVKELE 146
                 79***************************9...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-1893169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.95E-1493150No hitNo description
PROSITE profilePS5088815.26994145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-1195146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-1495159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-11100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MSALVDALCA PPSDAAALIY DTFNAAGFLF DGSAAAALYD GAGIVVGPAP AQQQQVAEVA  60
LAGETQAATS SAPTRIRKRR RRARSCKSRE ETETQRMTHI AVERNRRRQM NEYLAVLRSL  120
MPEVYVQRGD QASIVGGAIE FVKELEQQLQ CLEAQKRALL VHQHKAPARP DSTPMHPTTS  180
STKTTVCVES ATTTTSNCSS SVTEDAADHA PPPPFAQFFT YPQYVWCHSP RDPAAACATA  240
AEDGGGRSGV ADIEVTLVET HASLRVMTPR RPGQLLGLVT GLQSLRLAVL HLSVTTLDAL  300
ALYSISVKVE EGCGLSTVDD IAAAVHHVLC IIDADAAAEQ QVLSAAGPR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17680RKRRR
27683RKRRRRAR
395106RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo017490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953510.10.0transcription factor bHLH94
SwissprotQ9C7T43e-71BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1E5W2K00.0A0A1E5W2K0_9POAL; Uncharacterized protein
STRINGPavir.Ab02502.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-29bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]