PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do017468.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

BES1

Protein Properties

Length: 472aa MW: 48967.1 Da PI: 9.4133

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do017468.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	94.4	2.6e-29	2	70	26	93
DUF822 26 aakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspess 93 aa i+ GLR++Gny lp+++DnneVlkALc+eAGw+ve+DGttyrk s p + + + a++ ss Do017468.1 2 AANIFRGLRENGNYFLPQHCDNNEVLKALCNEAGWIVEPDGTTYRKASPPVhQPVPPVHQPATVCSYSS 70 89********************************************99999333333444444444444 PP
2	DUF822	143	2.8e-44	133	236	2	100
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.....eeaeaagssasaspesslq 95 ++ r p+ +ErEnn++RE rRR +a i+ GLR++Gny lp ++DnneVlkALc+eAGw+ve+DGttyr+g+kp+ + +g sa ++p ss+ Do017468.1 133 ATVRVPSLRERENNRLREQRRRLTTANIFRGLRENGNYMLPRHCDNNEVLKALCNEAGWIVEPDGTTYRQGCKPPsayrrISGVGIGGSAPVTPRSSYP 231 56799*********************************************************************9766544566778899999999988 PP DUF822 96 sslks 100 s+ + Do017468.1 232 VSPAA 236 55544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	2.5E-28	2	71	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
Pfam	PF05687	3.5E-42	135	245	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MAANIFRGLR ENGNYFLPQH CDNNEVLKAL CNEAGWIVEP DGTTYRKASP PVHQPVPPVH 60 QPATVCSYSS RALSYREGTR EVIRGRMNGG KMGGGVAGAG AGGSSGGGGG GAGGGKGNGE 120 WNGNGNGKGK GKATVRVPSL RERENNRLRE QRRRLTTANI FRGLRENGNY MLPRHCDNNE 180 VLKALCNEAG WIVEPDGTTY RQGCKPPSAY RRISGVGIGG SAPVTPRSSY PVSPAAGYGL 240 SPGSSPSYPK LGGGGYGAAC GGEAGSSGLL PWMKKRPHGG DFSYPDYGKG SFTAPVTPQY 300 GSPLSRKLAR WAAENAATGA SSNVQPPWAG GAGLSRYAPQ QPVTMPPSPV NGGAAVDPVS 360 LLAGIQKAVA ANNNNNNAPA LGYNPFAAFG AGASSSRLRA PGPGQSSGGS RAPVARGSGD 420 MEMEEPYEFS FGRGGDEQYG AWEGEVTSED YVDEDSLELT LGNTKTRADR AT

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MAANIFRGLR ENGNYFLPQH CDNNEVLKAL CNEAGWIVEP DGTTYRKASP PVHQPVPPVH  60
QPATVCSYSS RALSYREGTR EVIRGRMNGG KMGGGVAGAG AGGSSGGGGG GAGGGKGNGE  120
WNGNGNGKGK GKATVRVPSL RERENNRLRE QRRRLTTANI FRGLRENGNY MLPRHCDNNE  180
VLKALCNEAG WIVEPDGTTY RQGCKPPSAY RRISGVGIGG SAPVTPRSSY PVSPAAGYGL  240
SPGSSPSYPK LGGGGYGAAC GGEAGSSGLL PWMKKRPHGG DFSYPDYGKG SFTAPVTPQY  300
GSPLSRKLAR WAAENAATGA SSNVQPPWAG GAGLSRYAPQ QPVTMPPSPV NGGAAVDPVS  360
LLAGIQKAVA ANNNNNNAPA LGYNPFAAFG AGASSSRLRA PGPGQSSGGS RAPVARGSGD  420
MEMEEPYEFS FGRGGDEQYG AWEGEVTSED YVDEDSLELT LGNTKTRADR AT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	2e-18	1	206	392	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	2e-18	1	206	392	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	2e-18	1	206	392	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	2e-18	1	206	392	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	94	GGKMGGG

Functional Description ? help Back to Top
Source	Description
UniProt	May function in brassinosteroid signaling. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do017468.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004070	4e-43	AP004070.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1705_E12.
GenBank	AP014958	4e-43	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	4e-43	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819084.1	1e-78	protein BZR1 homolog 4-like
Swissprot	Q5Z9E5	5e-46	BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBL	A0A3L6QEY5	2e-83	A0A3L6QEY5_PANMI; Uncharacterized protein
STRING	Pavir.Aa02766.1.p	5e-81	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18666	5	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	9e-29	BES1/BZR1 homolog 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]