PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017455.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 303aa    MW: 33100.6 Da    PI: 8.5663
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017455.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM120.31.8e-37151431128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97 
                 l+pGf+F+Ptde++vv+yL++++ + +l+    i +vd++ ++PwdL     +++ e y+Fs+r ++ ++g+r +ra+ +g Wka+gkd +++s+  + 
  Do017455.1  15 LAPGFKFRPTDEDIVVHYLRPRAMNVPLPS-ASIVDVDVLGHNPWDLV---PEGSMEKYYFSQRVSRWPRGNRCKRAAGDGHWKASGKDVPIFSNdvN- 108
                 579************************999.67**************4...4567899************************************7442. PP

         NAM  98 el.....vglkktLvfykgrapkgektdWvmheyrl 128
                        vglkkt+vfy+g+ap ge+t+Wvm+ey+l
  Do017455.1 109 -SrvplvVGLKKTMVFYRGKAPFGENTEWVMQEYSL 143
                 .355788***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-4113153IPR003441NAC domain
PROSITE profilePS5100541.86815211IPR003441NAC domain
PfamPF023655.0E-2017143IPR003441NAC domain
SuperFamilySSF1019411.31E-41199211IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAVSHPIISG APVLLAPGFK FRPTDEDIVV HYLRPRAMNV PLPSASIVDV DVLGHNPWDL  60
VPEGSMEKYY FSQRVSRWPR GNRCKRAAGD GHWKASGKDV PIFSNDVNSR VPLVVGLKKT  120
MVFYRGKAPF GENTEWVMQE YSLVEAGLMP CRVLRPRGGS NLGRCGCAAA VIAKKNDELS  180
EALRNATARL DKEPVMVNPD DSWVVCHIYK KKKRMPRVIA QGYNIAGGGQ VPFFDFIGQG  240
NPIAQGYNIA RGGQVPFFDF FGQGNPEETA SSSSLTGPPL EKENDDTEGG SSTNEKACSS  300
EGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-291114311140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo017455.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828753.11e-167NAC transcription factor NAM-B1-like
TrEMBLA0A1E5VDA00.0A0A1E5VDA0_9POAL; NAC domain-containing protein 41
STRINGPavir.Ha00546.1.p1e-145(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.22e-39NAC domain containing protein 41