PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do017432.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Dof

Protein Properties

Length: 337aa MW: 33712.3 Da PI: 9.8849

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do017432.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.3	8.1e-39	44	104	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e lkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+++ Do017432.1 44 PEPGLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTK 104 56789*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-38	28	102	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.609	48	102	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-32	48	102	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	50	86	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MASIVAAASG GGGGGAGGRG PTGGSAVRPG SMTERARLEK IPQPEPGLKC PRCESTNTKF 60 CYFNNYSLSQ PRHFCKTCRR YWTRGGALRN VPVGGGCRRN KRTKSSKSNS SSAASASTTG 120 GTSSSTSSTA TGGSSAAAAA AGIMPPQGQL PFLASLHHPL GGDHYSTGAS RLGFAGLSSL 180 DPVDYQLGAS GATGTAIGLE QWRLPQIQQF PFLSRPDAVP PPMSGIYPFD VETHGDAAGF 240 AGQMLGGSKV PGSAGLITQL ASVKMEDNPP SAALTSSPRE FLGLPGNLQF WGGGNGASGN 300 NGGNANNAGS GGGGAAAPGS SWVDLSGFNS SSSGNIL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do017432.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582401	0.0	KC582401.1 Sorghum bicolor dof4 protein (dof4) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792577.1	1e-160	dof zinc finger protein DOF2.4-like
TrEMBL	A0A1E5WK86	0.0	A0A1E5WK86_9POAL; Dof zinc finger protein DOF5.1
STRING	Pavir.Ia00290.1.p	1e-152	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4893	29	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.2	3e-44	OBF-binding protein 3