PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017427.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 438aa    MW: 47296.7 Da    PI: 6.3942
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017427.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-164188148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTt Ed  lvd v+++G g+W+++ r  g+ R++k+c++rw ++l
       Do017427.1 41 KGPWTTAEDAMLVDHVRRHGEGNWNAVQRLTGLLRCGKSCRLRWTNHL 88
                     79******************************99***********996 PP
2Myb_DNA-binding51.22.9e-1694137146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+++++E++l++++++qlG++ W++ a++++ gRt++++k++w++
       Do017427.1  94 KGSFSPDEELLIAQLHAQLGNK-WARMAAHLP-GRTDNEIKNYWNT 137
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.3053688IPR017930Myb domain
SuperFamilySSF466891.46E-2840135IPR009057Homeodomain-like
SMARTSM007172.1E-134090IPR001005SANT/Myb domain
PfamPF002495.2E-144188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-204295IPR009057Homeodomain-like
CDDcd001671.12E-104388No hitNo description
PROSITE patternPS0017505665IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129422.71789143IPR017930Myb domain
SMARTSM007171.3E-1493141IPR001005SANT/Myb domain
PfamPF002493.0E-1594137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2496142IPR009057Homeodomain-like
CDDcd001676.75E-1196137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MEKSPGAVLT SSPEEEEEKA AEAYGEEQQA GEGAAPVVLK KGPWTTAEDA MLVDHVRRHG  60
EGNWNAVQRL TGLLRCGKSC RLRWTNHLRP NLKKGSFSPD EELLIAQLHA QLGNKWARMA  120
AHLPGRTDNE IKNYWNTRTK RRQRAGLPVY PPEVQLQLAL SKRCRYDDFS PLPSPQLPGA  180
ANVQALDAAT AGYTSSRPAP LDLARQLAVT NQTVQFLSAP SSPWARPFAR NAQYFQFAHS  240
SPVSPSTPTG PLHPVTPDLS LGYGVRSTDH SRLAPLSPSP GPRVELPSNQ FGQAMPLTSA  300
ATAAGLVPDQ HQNAASLEKM LQELHDAIKV DPPAANGDAV LERHGGRENK SGGQRRDDDM  360
DTLFDMMIPT LNAPETVPLP QAAAPNHSGS TSHHSSDDQD PSTVDLGVDL PVAGGASSSD  420
QDWGLDGVCQ WSNMSRIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-283914225127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo017427.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0425370.0BT042537.1 Zea mays full-length cDNA clone ZM_BFb0325G13 mRNA, complete cds.
GenBankKJ7275320.0KJ727532.1 Zea mays clone pUT5392 MYB transcription factor (MYB129) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982528.10.0myb-related protein P
TrEMBLA0A1E5VV010.0A0A1E5VV01_9POAL; Transcription factor GAMYB
STRINGPavir.Ib03827.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74203750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.21e-67myb domain protein 101