PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do017415.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 232aa MW: 24781.5 Da PI: 10.3887 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.8 | 3.4e-12 | 82 | 122 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +rRR++iN+++ +L++l+P + K + +++L ++++Y+ksLq Do017415.1 82 KRRRHKINERLKTLQQLVPGC-----YKSNQVSTLDQTIKYMKSLQ 122 9*******************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.119 | 72 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.1E-11 | 78 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-13 | 81 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-13 | 82 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-9 | 82 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.01E-12 | 82 | 126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MQPPAAFSLW SSPPPEVRFD PPSEDEMASW LCAIVRGEEL AILNDDDGRR DVPAKGSGDA 60 STTTDKTAEK LPVTAEAKGT KKRRRHKINE RLKTLQQLVP GCYKSNQVST LDQTIKYMKS 120 LQHHVQAMSI GPAHPAAAAM YPVVPSQYVP PAAPVAMPMS AAPMVLGQPP TMVSFGAMLL 180 PLPRYPAAVP VMMPAAAAPP RAPGGARSSA SHQQGSSRSK GRGSSSMRHQ KQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do017415.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806978.1 | 2e-70 | putative transcription factor bHLH056 | ||||
TrEMBL | A0A1E5WGT9 | 1e-167 | A0A1E5WGT9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca02790.1.p | 5e-73 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6283 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28800.1 | 2e-15 | bHLH family protein |