PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017335.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 579aa    MW: 60159.2 Da    PI: 8.6281
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017335.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0589111123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ C+k F r  nL+ H r H
  Do017335.1  89 FVCEVCNKGFQREQNLQLHRRGH 111
                 89*******************88 PP
2zf-C2H211.70.00081166188123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC +C+k++  +s+ k H +++
  Do017335.1 166 WKCDKCSKRYAVQSDWKAHSKVC 188
                 58*****************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.0E-688111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.02E-788111No hitNo description
PROSITE profilePS5015711.09489111IPR007087Zinc finger, C2H2
SMARTSM003550.004189111IPR015880Zinc finger, C2H2-like
PfamPF121713.8E-589111IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
SMARTSM00355300131161IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.6E-4154186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.02E-7161186No hitNo description
SMARTSM00355140166186IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MASNSSAAAV AALFGIRDGD HQDQIKPLLA QQHQQLPPAP LLNAASSSTG SGQATAASPP  60
PVKKKRSLPD PDAEVIALSP KTLLATNRFV CEVCNKGFQR EQNLQLHRRG HNLPWKLKQK  120
DPLQAQRRRV YLCPEPTCAH HDPARALGDL TGIKKHFCRK HGEKKWKCDK CSKRYAVQSD  180
WKAHSKVCGT REYRCDCGTL FSRRDSFITH RAFCDALAQE SARLPPPGLT AASHLYGATS  240
AANMALSLSQ VGSHLASTLG GDAHGHHQDL LRLGGGSAAS RFDHLLGSSS ASAFRPLPHP  300
PSSAFLMGAP QEFGDGDGTG SHGFLQGKPF QGLMHLPDLQ GNGAGGPSAS SAPGLFNLGY  360
IANSANSSGT SSHGHASQGH LTSDQFSEGG GGGGGGSESS AAMLFSGGGN FAGGDHQVAP  420
GGMYSDQAVM LPQMSATALL QKASQMGSSS SAHGGASVFG GHVGSSAPSA AHGRAPMLDQ  480
SQMHLQSLMN SLAAGGMFGG ANSGGMIDPR MYDMDQDVKF SQGRGGAEMT RDFLGVGGDG  540
VMRGMPVARG EHRDGAGDMS SLEAEMKSAS SSFTGGRMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34162224365Zinc finger protein JACKDAW
5b3h_F2e-34162224365Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo017335.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0542580.0BT054258.1 Zea mays full-length cDNA clone ZM_BFb0200O05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105281.20.0INDETERMINATE-related protein 10
TrEMBLA0A1E5V9G20.0A0A1E5V9G2_9POAL; Protein indeterminate-domain 6, chloroplastic
STRINGSb04g032140.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-104C2H2 family protein