PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do017245.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MYB | ||||||||
Protein Properties | Length: 347aa MW: 37747.3 Da PI: 10.9648 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.4e-17 | 61 | 106 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W++Ia+++ gR++k+c++rw++ Do017245.1 61 RGHWRPAEDAKLKELVAQYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 106 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 57.2 | 3.9e-18 | 113 | 157 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ + Do017245.1 113 RRAFSEEEEERLLAAHRAYGNK-WALIARLFP-GRTDNAVKNHWHVL 157 678*******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.473 | 56 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-14 | 60 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-16 | 61 | 106 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.86E-28 | 61 | 154 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-26 | 62 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.18E-13 | 64 | 105 | No hit | No description |
PROSITE profile | PS51294 | 27.733 | 108 | 162 | IPR017930 | Myb domain |
SMART | SM00717 | 8.8E-16 | 112 | 160 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-15 | 113 | 157 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-21 | 115 | 161 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.26E-8 | 124 | 158 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MAPEIAAFFG AAPPPAGLPS FREEQPHQDV AEEMYHVDDV EDGAAGHGHG GGGGQGKLCA 60 RGHWRPAEDA KLKELVAQYG PQNWNLIAEK LDGRSGKSCR LRWFNQLDPR INRRAFSEEE 120 EERLLAAHRA YGNKWALIAR LFPGRTDNAV KNHWHVLMAR KQREQSGALR RRKASSSSSS 180 SPGPAPPPQH FTPVVVLHHH HYTTGSHPLP PFHAGAGAHG VPPEASVAAD TRAYSGGESD 240 ESASTCTTDL SLGSAGAAVS CFYQSTYNGY DVATRAAVPA PAAAFAPSAR SAFSAPSPAR 300 HLRRRGRPAL LRLPRRRRDM IGAPGGRRVY RRRSKTRAPV TRRRTRA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-33 | 61 | 161 | 7 | 107 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 302 | 317 | RRRGRPALLRLPRRRR |
2 | 330 | 343 | RRRSKTRAPVTRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do017245.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU964855 | 0.0 | EU964855.1 Zea mays clone 282116 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817647.1 | 1e-135 | transcription factor CSA-like | ||||
Swissprot | Q5NBM8 | 4e-93 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | A0A1E5VEI2 | 0.0 | A0A1E5VEI2_9POAL; Transcription factor MYB44 | ||||
STRING | Pavir.J31094.1.p | 1e-131 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 1e-56 | myb domain protein 105 |