PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do017026.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 329aa MW: 35321.2 Da PI: 8.4221 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 47.4 | 2.7e-15 | 229 | 265 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCg ++ Tp +Rrgp g+++LCnaCGl+++ kg+ Do017026.1 229 CQNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 265 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 1.5E-8 | 97 | 132 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 15.179 | 97 | 132 | IPR010399 | Tify domain |
Pfam | PF06200 | 7.3E-12 | 99 | 131 | IPR010399 | Tify domain |
Pfam | PF06203 | 2.1E-15 | 158 | 198 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.473 | 158 | 200 | IPR010402 | CCT domain |
SMART | SM00401 | 3.2E-11 | 223 | 277 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.42E-10 | 226 | 280 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.0E-13 | 227 | 267 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 229 | 256 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 3.51E-13 | 229 | 283 | No hit | No description |
Pfam | PF00320 | 5.0E-13 | 229 | 265 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 329 aa Download sequence Send to blast |
MRSLLTSHGR TRRPAVYMCA VRHHHACAAP VHPSTRALEP SPSAPVRASP PSDPQPMAAE 60 PAADDHDPRP PPADGPAAAG GGDASASASA AAAEALMSAA SEQLTMVYQG DVYVFDPVPP 120 QKVQAVLLVL GGYELPPGLV NMAVPTANDE KNTMAAIRVA SLMRFREKRK ERCFDKRIRY 180 SVRKEVAQKM KRRKGQFAGR SDFGDGACSS AACGSPANGE DDHFRETHCQ NCGISSRLTP 240 AMRRGPAGPR SLCNACGLMW ANKGTLRSPL NAPKMTPQHP VNPSKMGDTD DKNLIVLPME 300 HNQATVMMLE QEQKLDICPP TEEDIKSVS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do017026.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU958286 | 0.0 | EU958286.1 Zea mays clone 1683206 GATA transcription factor 25 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981867.1 | 1e-159 | GATA transcription factor 19 | ||||
Swissprot | Q0DNU1 | 1e-130 | GAT19_ORYSJ; GATA transcription factor 19 | ||||
TrEMBL | A0A1E5VL66 | 0.0 | A0A1E5VL66_9POAL; GATA transcription factor 19 | ||||
STRING | Si036747m | 1e-167 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3460 | 37 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51600.2 | 2e-53 | ZIM-LIKE 2 |