PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016955.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 462aa    MW: 48920.7 Da    PI: 9.096
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016955.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.3e-0681103123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cgk F r  nL+ H r H
  Do016955.1  81 FVCEICGKGFQRDQNLQLHRRGH 103
                 89*******************88 PP
2zf-C2H213.50.00021157179123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k++  +s+ k H +t+
  Do016955.1 157 WKCEKCSKRYAVQSDWKAHSKTC 179
                 58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.26E-780103No hitNo description
SMARTSM003550.01281103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.61481103IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-581103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM00355260122152IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-4145178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.26E-7152177No hitNo description
SMARTSM00355130157177IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MASEAASIIS NPFAPITNQQ QQPPPPPPPP PCQQAEQQPP LPPPAKKKRN LPGTPGKSSI  60
IHPDAEVIAL SPRTLLATNR FVCEICGKGF QRDQNLQLHR RGHNLPWKLR QRSGKEPRKR  120
VYVCPEKSCV HHNPARALGD LTGIKKHFCR KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG  180
TREYRCDCGT LFSRRDSFIT HRAFCDALAE ETARLNAAAG SSAATSSLCG QSYLFAGSPA  240
GLAVLPTNNI MMLPSAPASP HLKPAGQLLG GLSLWGGATL LPMGDIGGVG APVPPQLYAD  300
LFAPSSGAPP RLDAAQLGWL YGNGKLSSSN ASELMTTTEA DSSVPSVFSG QQHAKPAAPT  360
DMSATALLRK AAQMGAMTSS GNEMSAEDDA VAGGAMFGAS QQTSANNLIT AATGNVAYDD  420
VLLAAVRHAG LKDAVGREET RDFLGVGVQA LCSSSLPLHG WI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-36153222372Zinc finger protein JACKDAW
5b3h_F2e-36153222372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016955.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-175HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818706.10.0zinc finger protein MAGPIE-like
RefseqXP_025818707.10.0zinc finger protein MAGPIE-like
SwissprotQ9ZWA61e-127IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A1E5VAN50.0A0A1E5VAN5_9POAL; Zinc finger protein MAGPIE
STRINGORGLA01G0080600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-119C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]