PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do016928.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 24338.7 Da PI: 4.6207 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.5 | 1.4e-17 | 53 | 102 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g Do016928.1 53 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFVTAEMAARAHDVAALAIKG 102 69****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.6E-32 | 53 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.1E-21 | 53 | 111 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.774 | 53 | 110 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-37 | 53 | 116 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.3E-12 | 53 | 102 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.18E-30 | 54 | 112 | No hit | No description |
PRINTS | PR00367 | 2.3E-10 | 54 | 65 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 76 | 92 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MAMEDSSSGS EPTTSSSAEA PASPTTASSS DTSSGAAGGG PKRQRTKDGH HPTYRGVRMR 60 AWGKWVSEIR EPRKKSRIWL GTFVTAEMAA RAHDVAALAI KGRAAHLNFP ELANDLPRPA 120 TAAPKDVQAA AALAAAADFP TPANAADAKG HPDDDDGPDA SAASATPPQP QDVDSSSNPD 180 DALFDLPDLL LDLTRHGPSS CQLSCAASWD DDVCFPGSGA GVFRLEEPLF WEY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-18 | 51 | 114 | 12 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00312 | DAP | Transfer from AT2G44940 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do016928.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728262 | 1e-120 | KJ728262.1 Zea mays clone pUT6539 AP2-EREBP transcription factor (EREB176) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827814.1 | 1e-107 | ethylene-responsive transcription factor ERF039-like | ||||
Swissprot | Q8LBQ7 | 1e-51 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A1E5VWN5 | 1e-165 | A0A1E5VWN5_9POAL; Ethylene-responsive transcription factor ERF034 | ||||
STRING | Si017865m | 2e-94 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 9e-39 | ERF family protein |
Publications ? help Back to Top | |||
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