PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do016693.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 762aa MW: 82308.3 Da PI: 6.0765 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.4 | 3.8e-21 | 89 | 144 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t+eq++++e++F+++++p++++r++L+++lgL+ rqVk+WFqNrR++ k Do016693.1 89 RKSYHRHTAEQIKAMEAVFKESPHPDEKQRQQLSQELGLSARQVKFWFQNRRTQIK 144 788999**********************************************9877 PP | |||||||
2 | START | 171.5 | 5.5e-54 | 261 | 488 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 ela +a+ el ++ +++ep+Wv+s+ + +n+de+++ f++++ +ea+r++gvv ++++l + ++d++ qW+e ++ ka tl v Do016693.1 261 ELAGRALHELTTMCTSGEPLWVRSVetgrDVLNYDEYVRLFQRGDDpgdrragWLVEASRETGVVYHDTTQLANAFMDVN-QWKELFPsmisKAGTLGV 358 578999***********************************998889***9999**************************.*******9999******* PP ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS START 85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175 i g g++qlm+ae q+l+plvp R+ f+R++++l+a++w++vdvS+d++++ + s ++ + pSg+++e+ ng++kvtwveh + + Do016693.1 359 IHAGenddqdGVVQLMFAEVQMLTPLVPtRELNFLRHCKKLTADKWAVVDVSIDNTEPEAQtASTACKCLKMPSGCIVEEQTNGRCKVTWVEHNTCLNA 457 **********************************************************9998999999******************************* PP XXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 176 lphwllrslvksglaegaktwvatlqrqcek 206 ++++++r+ +gla+ga++wva+l+ qce+ Do016693.1 458 VVPSMYRPAAANGLAFGARRWVAALKLQCER 488 *****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-23 | 74 | 140 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.18E-20 | 77 | 147 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.172 | 86 | 146 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.5E-19 | 88 | 150 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.28E-18 | 89 | 147 | No hit | No description |
Pfam | PF00046 | 1.3E-18 | 89 | 144 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 121 | 144 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 36.953 | 252 | 491 | IPR002913 | START domain |
SuperFamily | SSF55961 | 9.9E-26 | 255 | 488 | No hit | No description |
CDD | cd08875 | 2.07E-94 | 258 | 487 | No hit | No description |
SMART | SM00234 | 1.5E-44 | 261 | 488 | IPR002913 | START domain |
Pfam | PF01852 | 2.1E-43 | 262 | 488 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.1E-8 | 510 | 686 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010062 | Biological Process | negative regulation of trichoblast fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 762 aa Download sequence Send to blast |
MGSSRPPPRT QDFFPAPALS LSLQAGAFGR NEPAASAGDE VEVGDEGDDG IRLRPGEAAE 60 ISSENTGPGR SQSGGEEAGH EDGGDNKRRK SYHRHTAEQI KAMEAVFKES PHPDEKQRQQ 120 LSQELGLSAR QVKFWFQNRR TQIKATQERH ENSLLKSELE KLQEENRAMR ELVKKSPRCP 180 GCGAATAESN GEEQLRLENA KLKAEIERLR GTPGKTAADE LAAPASPSCS AHAVRTSNRS 240 LADGYGDVVG LLGHDRTRIL ELAGRALHEL TTMCTSGEPL WVRSVETGRD VLNYDEYVRL 300 FQRGDDPGDR RAGWLVEASR ETGVVYHDTT QLANAFMDVN QWKELFPSMI SKAGTLGVIH 360 AGENDDQDGV VQLMFAEVQM LTPLVPTREL NFLRHCKKLT ADKWAVVDVS IDNTEPEAQT 420 ASTACKCLKM PSGCIVEEQT NGRCKVTWVE HNTCLNAVVP SMYRPAAANG LAFGARRWVA 480 ALKLQCERMV FSVATNIPAR DSNGVATLAG RRSVLKLAQR MTSSLCRVIG GSRDLAWSKA 540 SNRGGGHDVR VTSRRNSGDP GEPQGLIACA VLSAWLPVSP AALFDFLRDE SRRHEWDDVM 600 LPGRPVQSCA SVAKGKYRGN CVTAYATKSS AGEQGGEWIL QDSSTNPCEC TVAYAAVDAA 660 ALRSVIDGYD PSGVALLPCG FAVMPDGLES RPAVITSRKE ERDRAAEEAE AGGSLVTVAF 720 QALTGSSPTT DDAPPLDAAE TVAGLASRAL GNIKKALRCE DC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do016693.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | PNIAATA | 6e-99 | D25322.1 Panicum miliaceum gene for cytosolic aspartate aminotransferase, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012701492.1 | 0.0 | homeobox-leucine zipper protein ROC9 | ||||
Swissprot | Q5JMF3 | 0.0 | ROC9_ORYSJ; Homeobox-leucine zipper protein ROC9 | ||||
TrEMBL | A0A1E5VBC3 | 0.0 | A0A1E5VBC3_9POAL; Homeobox-leucine zipper protein ROC9 | ||||
STRING | Si004904m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP799 | 38 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79840.1 | 0.0 | HD-ZIP family protein |