PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016692.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family CPP
Protein Properties Length: 588aa    MW: 63918.2 Da    PI: 8.6914
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016692.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR20.97.2e-07156191242
         TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                 +kk CnC++s    +YCeCfa+g++C+  C+C++C+N+ e+
  Do016692.1 156 KKKCCNCRNS----RYCECFASGAHCDG-CNCTNCFNNPEN 191
                 789*******....7*************.********9875 PP
2TCR50.93e-16235274140
         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                 k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Do016692.1 235 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 274
                 589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.3E-6155191IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.239156275IPR005172CRC domain
SMARTSM011148.4E-20235276IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12238273IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MAGKEQGGGG PPQRPPVPAA STQPPIKKLV RQLDFNSAAL AGNPAMAAAA AAVSRALQPR  60
SLPVGLQHPP QQARAAVPMG VPHQLHPRLL PVMRPHQVVG HVPLPRYAVP VAVPVPQLRP  120
VPPQPVQCPP VAVPLKPESP KPRARLFEGK DSTPTKKKCC NCRNSRYCEC FASGAHCDGC  180
NCTNCFNNPE NEVARREAID ATLERNPDAF RPKIGSSPHA NRNNEVSSDL PLVGKHNKGC  240
HCKKSGCLKK YCECFQANIL CSENCKCMDC KNFEGSEERR SLFQGDHKNS INMQQATNAA  300
VNGAVGATGF PSPSTSRKRK HIDPSLDHSS KEHVVQRNGH LPQKNAVPDG SIPISQSMHP  360
PTLGPFKVTY RPLLADIVQA EDIKELCRKA QEERVAEKED ERGGQKEYDK AGSLGSTNHD  420
REGNNQDPDH KASIDDHSSR GTHTGKAVLE ESRPNYADDH KSNRPMSPGT LALMCDEQDT  480
MFTTSQNAVA QQAVAVNQNQ SELYAEQERV VLTEFRDCLR KLVTCGRMKE ERYSMAIKSE  540
TSGHPGQVNG VSRVPNPKVD VHAVVKTFPG SSSHPVAGKP VTGHLDKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-2416028314131Protein lin-54 homolog
5fd3_B4e-2416028314131Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016692.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0672400.0BT067240.1 Zea mays full-length cDNA clone ZM_BFb0345D13 mRNA, complete cds.
GenBankHQ8586710.0HQ858671.1 Zea mays clone UT1107 CPP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815944.10.0LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 5
TrEMBLA0A1E5VBR40.0A0A1E5VBR4_9POAL; Protein tesmin/TSO1-like CXC 5
STRINGPavir.Eb03237.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-107Tesmin/TSO1-like CXC domain-containing protein