PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016655.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ARR-B
Protein Properties Length: 713aa    MW: 77320.7 Da    PI: 6.0744
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016655.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.32e-24216265151
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                 kpr++W+ eLH++Fv av++L G++kA+Pk+ilelm+v+ Lt+e+v+SHLQ
  Do016655.1 216 KPRVVWSVELHRKFVAAVNHL-GIDKAVPKRILELMNVDKLTRENVASHLQ 265
                 79*******************.***************************** PP
2Response_reg76.97.5e-26271351109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ +++l+++l++ +y +v+++ ++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge +++ + +  Ga 
    Do016655.1  27 VLAVDDDPVCLKVLETLLRRCQY-HVTTTNQAVIALRMLRENRdlFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTVMKGITHGAC 121
                   799********************.***************99999********************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+  eel++
    Do016655.1 122 DYLLKPVRLEELRN 135
                   ************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.57E-3424150IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.8E-4124175No hitNo description
SMARTSM004481.6E-3025137IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.32926141IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.2E-2327136IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.80E-2628140No hitNo description
PROSITE profilePS5129411.876213272IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-24214266IPR009057Homeodomain-like
SuperFamilySSF466891.18E-15214267IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-22216265IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
LESAMRPEER NGVAGRVRDQ FPVGMRVLAV DDDPVCLKVL ETLLRRCQYH VTTTNQAVIA  60
LRMLRENRDL FDLVISDVHM PDMDGFKLLE LVGLEMDLPV IMLSVNGETK TVMKGITHGA  120
CDYLLKPVRL EELRNIWQHV VRRKFGNRER ANVDGYEECN RPSNADFDNV HSQITCGSPD  180
QSGRPSKKRK EYHSDEEDEG EESNGQENDD SSAPKKPRVV WSVELHRKFV AAVNHLGIDK  240
AVPKRILELM NVDKLTRENV ASHLQARHLP TLFNLSSTGP EEKNCANVME LSDEEKYRLY  300
LKRLSAVASQ QASIVAALGG SDPFMRMGAF EGLQGYQGFT SSAALSSFSS QGLLNRNNPT  360
SFGIQGISVS RPIQIATGNS TISHSIGDAN KYHLSLPGTS NRQGNLAHGL ATSIGQVQLP  420
QKWIQEETQD FSTFISGNGM VNSVPGTLRS VTNSPLLQQD LVECRQPKGV IQPSSSANSE  480
RLEGTVGVSS SLMDSHVSQQ SGLPSSVFSA SALPMNGSFG STNIAKLGAT SSGSTNICPS  540
NDLRVARNNE VGASSFGSVI LLPPDTAQTE KYLNFGGGSS LRHNMDGGNA DSLVDPKFMW  600
SSLPTSQAPS TIGSHHPLSQ RPSNGSLGIK MIEQTSASAS TTAPQTKIDM FISGDMLMPK  660
NTSDSSFPRI NSELSSSSCS FDGLLNSIIK VEKDDASFSD DLGCDFYSLG ACI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-23212265154ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016655.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954220.10.0two-component response regulator ORR23
SwissprotB8AEH10.0ORR23_ORYSI; Two-component response regulator ORR23
TrEMBLA0A1E5W8B80.0A0A1E5W8B8_9POAL; Two-component response regulator ORR23 (Fragment)
STRINGSi016546m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-98response regulator 12