PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016642.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 413aa    MW: 45826.3 Da    PI: 8.0451
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016642.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.21.6e-32421881128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........... 77 
                 lp+G++F+P+d+el+ e+L+  v++        +   +    +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+           
  Do016642.1  42 LPAGVKFDPSDQELI-EHLESLVKEGGsrahplI---DdfipTIEGDdGICYTHPENLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqserglhgse 135
                 799************.99****999985664332...133323555545**********.555666799******************879999999988 PP

         NAM  78 .tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                  + +++W++tgk+++v++ +g+++g+kk+Lv+y   g++ k+ekt+Wv+h+y+l
  Do016642.1 136 dVGEARWHKTGKTRPVIV-GGQQKGCKKILVLYtnYGKQGKPEKTNWVIHQYHL 188
                 877999************.9*************5557999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-3537206IPR003441NAC domain
PROSITE profilePS5100531.51642206IPR003441NAC domain
PfamPF023652.3E-1343188IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MISSSCTSEL TDEKLKDRQT SASRRCPSCG HNLGCNPDMI GLPAGVKFDP SDQELIEHLE  60
SLVKEGGSRA HPLIDDFIPT IEGDDGICYT HPENLPGVTR DGLSKHFFHR PSKAYTTGTR  120
KRRKIQSERG LHGSEDVGEA RWHKTGKTRP VIVGGQQKGC KKILVLYTNY GKQGKPEKTN  180
WVIHQYHLGN QEEKDGELVV SKVFYQTQQR SATATVDQRT RYGEMVIETS EAMQNALPGC  240
AADATAVTIA MVPPPQQQQK RQRQADDQCS IAPAKMSHEV TMLPSVGVGD QVEGDQGQCD  300
NHNIPSQHHG RSDLRAKPVP TMSFHVGRPT VQYASVVLDS RFCSPAILRR NGKNQKQQQK  360
VGRRSTEMEG LVIACQSAST EAGASTQSKE MQQPYHQYRP PDYNQDQHEL QCS
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016642.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808650.10.0NAC domain-containing protein 10-like isoform X2
TrEMBLA0A1E5W3H80.0A0A1E5W3H8_9POAL; NAC domain-containing protein 73
STRINGPavir.J36494.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-106NAC domain containing protein 75