PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016622.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 366aa    MW: 39286.3 Da    PI: 5.3704
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016622.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.9e-184289148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd llv++++ +G g+W++ ar  g++Rt+k+c++rw++yl
       Do016622.1 42 RGPWTVEEDVLLVNYIAAHGEGRWNSLARSAGLRRTGKSCRLRWLNYL 89
                     89********************************************97 PP
2Myb_DNA-binding53.74.6e-1795138146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
       Do016622.1  95 RGNITPEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 138
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.0573789IPR017930Myb domain
SuperFamilySSF466894.49E-3139136IPR009057Homeodomain-like
SMARTSM007174.2E-154191IPR001005SANT/Myb domain
PfamPF002493.1E-164289IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-224396IPR009057Homeodomain-like
CDDcd001676.06E-124489No hitNo description
PROSITE profilePS5129424.24890144IPR017930Myb domain
SMARTSM007171.6E-1594142IPR001005SANT/Myb domain
PfamPF002497.1E-1695138IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-2497143IPR009057Homeodomain-like
CDDcd001671.56E-1299138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDMDMGMGGL EELDVLAMSP GGSATSAAAA AAGSEDESDL RRGPWTVEED VLLVNYIAAH  60
GEGRWNSLAR SAGLRRTGKS CRLRWLNYLR PDVRRGNITP EEQLLILELH SRWGNRWSKI  120
AQHLPGRTDN EIKNYWRTRV QKHAKQLRCD VNSRQFRDVV RHVWIPRLVE RIQAESGCCA  180
AAAAGGQAAQ AAAAPVVAPA KTTASAPAAY HHGTYGGHLQ SAGVVQPNKQ AHGGYHHAAD  240
YYSYSEPGQA AAPAAMSPED TSSALRSSLT DASHGAPHCH TTSATTPTNE GCGAGGAARP  300
ATMDGDDVVH QEEEEEDVFG GTWSELLATA GSDGDSNSKI GLPDFEFADF EDSLWSLEDL  360
CLQQLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-25391421103MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-25401422103C-Myb DNA-Binding Domain
1msf_C1e-25401422103C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016622.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519091e-129JF951909.1 Triticum aestivum clone TaMYB26 R2R3-MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806553.10.0transcription factor MYB2-like
SwissprotQ10MB44e-91MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A1E5VIK10.0A0A1E5VIK1_9POAL; Transcription factor MYB108
STRINGSi022474m1e-176(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.12e-82myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]