PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016529.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 663aa    MW: 74154.8 Da    PI: 6.4315
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016529.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM241e-0713624810128
         NAM  10 tdeelvveyLkkkvegkk...leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.......kg 97 
                 td e++ ++ +   ++++    +  ++  +e  i +++Pw++p         ++ ++ ++    ++++k+r  ++gyWk+  ++k  + +       ++
  Do016529.1 136 TDTEIIGHFRASLEHREEstgQNN-DTpEAEDAIARLDPWEIP---------CHGYVATRMW--SSDEKTR--SQGYWKEDDNNKLAVISdtrtfgsES 220
                 799999776444433333332222.231344469999*****9.........2334444333..2345556..48****99887765555366666566 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 + vglk+tL f+   +++g+kt+ vm  y++
  Do016529.1 221 RYVGLKRTLEFH---KNDGTKTNRVMRTYEV 248
                 66**********...78999*******9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-6136252IPR003441NAC domain
PfamPF023651.8E-5136247IPR003441NAC domain
PROSITE profilePS508089.767472534IPR003656Zinc finger, BED-type
SMARTSM006142.1E-10472525IPR003656Zinc finger, BED-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MGSQATDSLG GIDLDSTGYL QDGPIFSPEL YGSYTGDGFN YDNTDARSAG RSACTGVEEL  60
LPHSENAPQE FVVVDPPVAN AGFTQQAPYP AGDAGGPSAA TGMEMEILHL ENGPAEVNSV  120
IPVDPYFAGI DLSTATDTEI IGHFRASLEH REESTGQNND TPEAEDAIAR LDPWEIPCHG  180
YVATRMWSSD EKTRSQGYWK EDDNNKLAVI SDTRTFGSES RYVGLKRTLE FHKNDGTKTN  240
RVMRTYEVVR HDVGVGSAQL RLLLAIENQK SGSTSPRYIP QILTWCMQRA TVVIECSRLI  300
PRMALLTSEG TARNVHATTI HPPLLTRRSY VTSAQRSMFT RRRRWRGGSE SPELNAGFAK  360
MDPWDPQLTP CYVTSSLSRE TNQGCHLHQR VSGATGGLVF CKVFQNYEDA VTYAFKELDR  420
MWNGDDEEEE YYNAHRRGKA RMSTLLHDFL LSEGVQGGQS RPGKRERTSA PDGRSEVWLQ  480
FTKIYTADPD RVYAVCHLCD RGYKGHSKKY GTSHLRRHNK TCSSKNHERE AELTATLSLS  540
SMLVTGFSLA LLFSGTGEWR MRYHDTWVTL FMIGDQSSNI SSESEIGILD DKLRIDQKPD  600
LFRVKLLAAV CFQDQKPDRR LDKKLYGLAL XKGADLLVEV IPEVCRLFPN LSMSYITFKN  660
NHS
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016529.1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15166411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-07NAC family protein