PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016516.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 128aa    MW: 13727 Da    PI: 4.4606
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016516.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.77.7e-102292855
         AP2 28 rkrfslgkfgtaeeAakaaiaarkkleg 55
                ++r++lg+++tae+Aa+a+++a++ + g
  Do016516.1  2 KTRIWLGTYDTAEDAARAYDEAARLMSG 29
                489********************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-18138IPR001471AP2/ERF domain
PROSITE profilePS5103213.261137IPR001471AP2/ERF domain
PfamPF008471.1E-5127IPR001471AP2/ERF domain
CDDcd000181.46E-16239No hitNo description
SuperFamilySSF541713.53E-12239IPR016177DNA-binding domain
SMARTSM003801.3E-9243IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
RKTRIWLGTY DTAEDAARAY DEAARLMSGP AARTNFPLSS SIGSTLSPTL RAKLEKCCTE  60
SSKQQAKDAA ADASGAAERD GGVRQEQDVK AEVVDDGEEY IEEMIRELTY YGSMEIQSPS  120
SGSSGAAH
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016516.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680905.12e-56ethylene-responsive transcription factor ERF003
SwissprotQ94AW59e-27ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A1E5VBQ88e-88A0A1E5VBQ8_9POAL; Uncharacterized protein (Fragment)
STRINGPavir.Ga00062.1.p3e-57(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.11e-11ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]