PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do016504.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | Nin-like | ||||||||
Protein Properties | Length: 239aa MW: 25254.2 Da PI: 6.7638 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 51.6 | 1.8e-16 | 22 | 61 | 4 | 43 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkR 43 ++s e++sk Fslpi++AA+ Lgvc++vLKriCR +GI R Do016504.1 22 SLSYEEISKLFSLPIAEAASILGVCTSVLKRICRSHGIVR 61 6899**********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 10.865 | 5 | 92 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.2E-14 | 23 | 61 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MASDAPPPQQ QPAPQPKPTR VSLSYEEISK LFSLPIAEAA SILGVCTSVL KRICRSHGIV 60 RSSGTSQGAA KSQQGSSKAG QVSVSPPVGK QNASPSLAHG SQAKAIPSYM DDFKYGFPSS 120 GLSCETMKWW GGSSDPDCAP TKDGSRETHG EMSKGMADDD ELDWGADEAE AEADAAVTAE 180 ASAQLCSLRR RAVDAGRKLL NGDTRRGQEF SRLNKRQKLA LAQVFGASLP DVVLLVFSE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do016504.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038614 | 1e-125 | BT038614.1 Zea mays full-length cDNA clone ZM_BFb0296N20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967322.2 | 1e-142 | uncharacterized protein LOC101771632 | ||||
TrEMBL | A0A368QZK0 | 1e-141 | A0A368QZK0_SETIT; Uncharacterized protein | ||||
TrEMBL | K3XKT2 | 1e-141 | K3XKT2_SETIT; Uncharacterized protein | ||||
STRING | Si002505m | 1e-142 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6705 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59580.2 | 3e-06 | Nin-like family protein |