PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do016499.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | WRKY | ||||||||
Protein Properties | Length: 498aa MW: 52173 Da PI: 8.1542 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.4 | 9.2e-31 | 245 | 303 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Do016499.1 245 ADGCQWRKYGQKMAKGNPCPRAYYRCTMAnGCPVRKQVQRCAEDRSILITTYEGTHNHP 303 7***************************999***************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.8E-34 | 229 | 305 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.23E-28 | 237 | 305 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.551 | 239 | 305 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.3E-37 | 244 | 304 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-27 | 246 | 303 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
MDKAHLLALD ASPRPLAFLN LHIARMSSAD DPSSAASRGR RRSVEVDFFS DDKDDGKKEK 60 TSGIRVSPEP PGGLAIKKED LTINLLPAAT RRRPDDDDDE DKMSRNTNEA ELGRMNEENQ 120 RLRGMVAQVT SSYQALQMHL VALTQQQAIP PAQKSSFQLG QQGPSSTTTR TVNNAAAAEE 180 PSDSSTEVGS PRRSSSTGNN KELPQPEPST AGWVPAEGRQ QQAQEASMRK ARVSVRARSE 240 APIIADGCQW RKYGQKMAKG NPCPRAYYRC TMANGCPVRK QVQRCAEDRS ILITTYEGTH 300 NHPLPPAAMA MASTTSAAAS MLLSGSMPSA DGMSPASNSF LARAVLPCSS SVATISASAP 360 FPTVTLDLTH GPPGAAAARP LAPPQFHVPS QAPLDNRSRF SGLHLSSSDN TTTTTAAVVA 420 PPPMGIGLAD TVSAAAAAIT ADPNFTMALA AAITSIIGGG GGGGGGGQGH QQLHGQQNNV 480 TSSSNNTATS NNTNSETQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-22 | 231 | 307 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do016499.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT085752 | 1e-126 | BT085752.2 Zea mays full-length cDNA clone ZM_BFc0057C03 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817237.1 | 0.0 | WRKY transcription factor 6-like isoform X3 | ||||
Swissprot | Q9C519 | 1e-104 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A1E5V4N7 | 0.0 | A0A1E5V4N7_9POAL; WRKY transcription factor 6 | ||||
STRING | BRADI2G08620.1 | 1e-168 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5265 | 36 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 5e-76 | WRKY family protein |