PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016453.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 339aa    MW: 37193.9 Da    PI: 4.8579
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016453.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-18104154155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+++G+r++  +g+W+AeIrdp++     r++lg++ ++eeAa+a++a +++++g
  Do016453.1 104 SQFRGIRQRT-WGKWAAEIRDPRK---GVRVWLGTYNSPEEAARAYDAEARRIRG 154
                 789****999.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.90E-31104163No hitNo description
SuperFamilySSF541712.09E-21104164IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-30105164IPR001471AP2/ERF domain
PROSITE profilePS5103222.813105162IPR001471AP2/ERF domain
PfamPF008477.8E-11105154IPR001471AP2/ERF domain
SMARTSM003802.8E-33105168IPR001471AP2/ERF domain
PRINTSPR003672.5E-9106117IPR001471AP2/ERF domain
PRINTSPR003672.5E-9128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MCGGAVLSKF IPRSRPVTAG NLCPEGKKPA SAEAQKKRAR EVDDSDFEAD FKKFVESVKW  60
EVESEDEAKP IAAPRSVVAR DGLNTTAAGV DGSAVTSPER KRKSQFRGIR QRTWGKWAAE  120
IRDPRKGVRV WLGTYNSPEE AARAYDAEAR RIRGKKAKVN FPDEAPVASL KPRAEPTSVK  180
VPKMDAEEKL IINNTTISEP FMQTQNMSFV PLVKSSAPIQ EPFVNMSSDQ GSNSFSCSDF  240
SLENDTRTPD ITSVLAPVPI LTEVDKSAFL QMPTNAVVPP VTGNASVDLT EFDPYMNFLM  300
DSGSDESINT LSSCDGSQDM FSNVYLWSFD DMPMPGGLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-181041691379Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016453.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964607.11e-142ethylene-responsive transcription factor 1
SwissprotQ6K7E61e-108ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A1E5UKA80.0A0A1E5UKA8_9POAL; Ethylene-responsive transcription factor 1
STRINGSi006802m1e-142(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.37e-43related to AP2 12
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]