PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016425.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 373aa    MW: 39109.5 Da    PI: 4.9232
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016425.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH437.9e-14137188155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N+ ++ Lr+ +P++   + ++ + a+i   A++Y+k+L+
  Do016425.1 137 QRMTHIAIERNRRKQMNEYLAVLRSFMPPS---YVQRGDQASIIGGAINYVKELE 188
                 79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.0E-13135192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.78E-14135192No hitNo description
SuperFamilySSF474594.32E-17136200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.567136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-11137188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-10142193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MALEAVVFSE GLFGSWAMAA APGGVGGGWS WGHGENGRGE AMEGMMDLEE AAAAAGYWDV  60
GASSSVMMQG AEEPDGSSAA PPPENGGGGG NAAAAGAGFG QEVAVAATAV AMSPPPAGRR  120
KRRRARSVKN REEVESQRMT HIAIERNRRK QMNEYLAVLR SFMPPSYVQR GDQASIIGGA  180
INYVKELEQL LQSLEAWKHA RARHDLSPGA GDAAAAPFAG FFTFPQYSMS AATSALSPVT  240
SNTTPAEDEG PNNAADADGN GGDDASGSRP SSVADIEVTM VESHANLKLL SRWRPRQLLR  300
LVAGLQGHRL TVLHLNATSD AHHMALYSLS LKVEDDCALS SVDDIAAAVH RILEAIDQEA  360
ASCTDKLRSI ADD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119123RKRRR
2137148RMTHIAIERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016425.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973718.11e-137transcription factor bHLH94
SwissprotQ9C7T45e-72BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1E5UJR10.0A0A1E5UJR1_9POAL; Transcription factor bHLH96
STRINGSi013925m1e-136(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-63bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]