PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016375.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 361aa    MW: 38873 Da    PI: 7.8618
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016375.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.21.4e-52271611128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.........kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                 lppGfrFhPtdeel+++yL++kv++ ++ +  ++ e+d++k+ePwdLp+          +k +ekewyfF+ +d+ky+tg r+nrat++gyWkatgkdk
  Do016375.1  27 LPPGFRFHPTDEELITHYLARKVADARFAA-LAVGEADLNKCEPWDLPSvsspwdlaaLAKMGEKEWYFFCLKDRKYPTGLRTNRATEAGYWKATGKDK 124
                 79*************************999.67***************55899999875566999********************************** PP

         NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                 ++++ +++lvg kktLvfy+grapkgek+ Wvmheyrl
  Do016375.1 125 DIFR-GKALVGSKKTLVFYTGRAPKGEKSGWVMHEYRL 161
                 ****.99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.42E-6118187IPR003441NAC domain
PROSITE profilePS5100557.22627187IPR003441NAC domain
PfamPF023656.2E-2928161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
DSGCGCRDGR DARSSAMEQA LHQPMELPPG FRFHPTDEEL ITHYLARKVA DARFAALAVG  60
EADLNKCEPW DLPSVSSPWD LAALAKMGEK EWYFFCLKDR KYPTGLRTNR ATEAGYWKAT  120
GKDKDIFRGK ALVGSKKTLV FYTGRAPKGE KSGWVMHEYR LHGKIPGAIP KPASSKNEWV  180
LCRVFKKSLI LGVGVAPAAK RGAMEMAARM DDIAAISHLP PLMDVSGAAA VNPAAAAHVT  240
CFSNALEGHF FNQTTAPQAA ASATDHLGLA SSSPFLSSFA QYGPLYHHGG VSLVQLLESS  300
GYGAGGGLPD MPKEQPAPPC NKGGERERLS ASQDTGLTSD AHPEISSSSG QRFDHEQLWG  360
Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-502518815166NO APICAL MERISTEM PROTEIN
1ut4_B8e-502518815166NO APICAL MERISTEM PROTEIN
1ut7_A8e-502518815166NO APICAL MERISTEM PROTEIN
1ut7_B8e-502518815166NO APICAL MERISTEM PROTEIN
3swm_A1e-492518818169NAC domain-containing protein 19
3swm_B1e-492518818169NAC domain-containing protein 19
3swm_C1e-492518818169NAC domain-containing protein 19
3swm_D1e-492518818169NAC domain-containing protein 19
3swp_A1e-492518818169NAC domain-containing protein 19
3swp_B1e-492518818169NAC domain-containing protein 19
3swp_C1e-492518818169NAC domain-containing protein 19
3swp_D1e-492518818169NAC domain-containing protein 19
4dul_A8e-502518815166NAC domain-containing protein 19
4dul_B8e-502518815166NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00496DAPTransfer from AT5G07680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016375.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0607701e-110BT060770.2 Zea mays full-length cDNA clone ZM_BFb0046M18 mRNA, complete cds.
GenBankBT0635431e-110BT063543.1 Zea mays full-length cDNA clone ZM_BFc0075B16 mRNA, complete cds.
GenBankBT0844931e-110BT084493.2 Zea mays full-length cDNA clone ZM_BFb0122M24 mRNA, complete cds.
GenBankEU9682331e-110EU968233.1 Zea mays clone 317195 NAC domain protein NAC5 mRNA, complete cds.
GenBankJX4285301e-110JX428530.1 Zea mays subsp. mays clone pUT3130 NAC32 NAC type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975858.10.0NAC domain-containing protein 92 isoform X1
TrEMBLA0A1E5VC390.0A0A1E5VC39_9POAL; NAC domain-containing protein 79 (Fragment)
STRINGPavir.Gb01850.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27303787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.21e-91NAC domain containing protein 80