PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do016373.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MYB_related | ||||||||
Protein Properties | Length: 337aa MW: 35174.1 Da PI: 6.0407 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.5 | 1.5e-18 | 14 | 79 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT...................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...................tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++q+G g W++Ia +++ +Rt++++k++w+++l Do016373.1 14 KGPWTPEEDQKLLAYIEQHGHGcwrslpakavvyaadadllAWSAIATHLP-KRTDNEIKNYWNTHL 79 79*************************************************.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-24 | 5 | 87 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.95E-14 | 9 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.021 | 9 | 83 | IPR017930 | Myb domain |
SMART | SM00717 | 3.2E-17 | 13 | 81 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-16 | 14 | 79 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.93E-14 | 16 | 79 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MGRSPCCEKE GLKKGPWTPE EDQKLLAYIE QHGHGCWRSL PAKAVVYAAD ADLLAWSAIA 60 THLPKRTDNE IKNYWNTHLK KRLAKMGIDP VTHKPRSDAL GGAGVGGGGA AGAQHARAAA 120 HLSHTAQWES ARLEAEARLA REARLRALAA SAASASASVS AAPHLLPGPS SAAHGLESPT 180 STLSFSESAA LASVLEAHGA AARAAMQPMQ AYEEACKEQQ QQWGDHVVHA ADAAFAGAGF 240 TGLLLDGAMN QQDLRRDADA GLQETEEEKN YWDSILNLVN SSSSVSLPTS VVAPAPEAYS 300 SSVSVVVPAP EAYSSSASLP SSVAVSGPEA YSPAPEF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do016373.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF184903 | 0.0 | KF184903.1 Saccharum hybrid cultivar R570 clone BAC 121P14 complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975862.1 | 1e-147 | transcription factor MYB16 | ||||
Swissprot | Q9LXF1 | 5e-76 | MYB16_ARATH; Transcription factor MYB16 | ||||
TrEMBL | A0A1E5VC58 | 0.0 | A0A1E5VC58_9POAL; Uncharacterized protein | ||||
STRING | Si010352m | 1e-146 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.2 | 6e-44 | myb domain protein 16 |
Publications ? help Back to Top | |||
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