PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016373.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 337aa    MW: 35174.1 Da    PI: 6.0407
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016373.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-181479148
                     TSSS-HHHHHHHHHHHHHTTTT...................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...................tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+ +++q+G g                    W++Ia +++ +Rt++++k++w+++l
       Do016373.1 14 KGPWTPEEDQKLLAYIEQHGHGcwrslpakavvyaadadllAWSAIATHLP-KRTDNEIKNYWNTHL 79
                     79*************************************************.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-24587IPR009057Homeodomain-like
SuperFamilySSF466891.95E-14989IPR009057Homeodomain-like
PROSITE profilePS5129420.021983IPR017930Myb domain
SMARTSM007173.2E-171381IPR001005SANT/Myb domain
PfamPF002494.1E-161479IPR001005SANT/Myb domain
CDDcd001679.93E-141679No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGRSPCCEKE GLKKGPWTPE EDQKLLAYIE QHGHGCWRSL PAKAVVYAAD ADLLAWSAIA  60
THLPKRTDNE IKNYWNTHLK KRLAKMGIDP VTHKPRSDAL GGAGVGGGGA AGAQHARAAA  120
HLSHTAQWES ARLEAEARLA REARLRALAA SAASASASVS AAPHLLPGPS SAAHGLESPT  180
STLSFSESAA LASVLEAHGA AARAAMQPMQ AYEEACKEQQ QQWGDHVVHA ADAAFAGAGF  240
TGLLLDGAMN QQDLRRDADA GLQETEEEKN YWDSILNLVN SSSSVSLPTS VVAPAPEAYS  300
SSVSVVVPAP EAYSSSASLP SSVAVSGPEA YSPAPEF
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016373.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1849030.0KF184903.1 Saccharum hybrid cultivar R570 clone BAC 121P14 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975862.11e-147transcription factor MYB16
SwissprotQ9LXF15e-76MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A1E5VC580.0A0A1E5VC58_9POAL; Uncharacterized protein
STRINGSi010352m1e-146(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.26e-44myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]