PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016308.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 426aa    MW: 46088.2 Da    PI: 6.4038
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016308.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30197255259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+++Hnh+
  Do016308.1 197 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPSMLVITYTSDHNHP 255
                 699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.5E-31191257IPR003657WRKY domain
PROSITE profilePS5081132.742191257IPR003657WRKY domain
SuperFamilySSF1182905.62E-26194257IPR003657WRKY domain
SMARTSM007746.3E-37196256IPR003657WRKY domain
PfamPF031061.4E-25198255IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MCDFFWLSPA DQGDLSDVVR ASLHQQPSPH LRLPPATPEP TVCGHGSLGS HHLPEEEEEL  60
QPLQGRVNNL GDDDHDWQRQ LVHGNGGMGL MVIGSNGGCD QALYPQHHPE AEGLLIHPQL  120
MPGPQPSFVE REDDVANAPV VLDELGLDMA MAPHPHHAPS IKRRKSQTKK VVCIPAPVAP  180
PPGVGGRPNT SGEVVPSDLW AWRKYGQKPI KGSPYPRGYY RCSSSKGCSA RKQVERSRTD  240
PSMLVITYTS DHNHPWPTQR NALAGSTRPP AGSSSSAKSH HHQRNCSAAA AVPDPTPPHR  300
HANNVVVADN ATTPGSITTS IRHQLLKQEV LDTDNLETAQ DAAADHDLSG MIADMDGALN  360
VLCASSFHSK RQQQHATADH LEKLPEEEDK QLLLDRDSFS FSFLDWVGAS FGVGEAAASK  420
GGYGYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-23165258280Disease resistance protein RRS1
5w3x_D2e-23165258280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016308.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0187279e-75AC018727.10 Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence.
GenBankAP0149669e-75AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126189e-75CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
GenBankKC9546109e-75KC954610.1 Oryza sativa Japonica Group cultivar Dongjin WRKY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983519.10.0probable WRKY transcription factor 14
TrEMBLA0A1E5W3V00.0A0A1E5W3V0_9POAL; Putative WRKY transcription factor 35
STRINGSi038537m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118473039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.15e-54WRKY DNA-binding protein 35