PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016242.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 502aa    MW: 54243.5 Da    PI: 5.0323
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016242.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY22.22.9e-07272299229
                 --SS-EEEEEEE--TT-SS-EEEEEE-S CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCts 29 
                  Dg+nWrKYGqK+   se++ +   C+s
  Do016242.1 272 ADGFNWRKYGQKQSAVSETSEQQLFCSS 299
                 7************988888777666665 PP
2WRKY100.88.4e-32352409259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK vkg+++prsYYrCt+ gCpv+k+ve++ +d + +++tYeg+Hnh+
  Do016242.1 352 SDGYRWRKYGQKIVKGNPNPRSYYRCTHGGCPVRKHVEKAPDDVNNIVVTYEGKHNHD 409
                 8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-5262299IPR003657WRKY domain
PROSITE profilePS508119.087266338IPR003657WRKY domain
PfamPF031061.5E-4273302IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.6E-31345411IPR003657WRKY domain
SuperFamilySSF1182901.96E-27346411IPR003657WRKY domain
PROSITE profilePS5081132.948346411IPR003657WRKY domain
SMARTSM007741.2E-35351410IPR003657WRKY domain
PfamPF031061.3E-25353409IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MADGDPEPAP APADENPSAP AAAVEVEEAL PPLPEGPAEE KRPSQEAAAT EVETRPLPEG  60
PGAPPAEDLE KEAEAETKEG KEVEKEMGDE PKEKREEEDK GKGKKQEKEK VEKAKGKVDA  120
KGKVHAVVKV EGTEKEVKAT RRPAGASADT PILAVPVVAV PCFIAPPGFA MIFELSMQDI  180
VSLLPYKVTM QFACPYPALA SVTAQAQMHL QSPTSSTCSE TPSSPFYITP RSIVPLQQSP  240
SVTEGNVCRQ LADKSFSSES KSHHHAVVNM VADGFNWRKY GQKQSAVSET SEQQLFCSSD  300
CEGDAGNKSE DEHPTAEPLP KRRAIETTAP NLTPVLRTVR EQKIIVQAGK MSDGYRWRKY  360
GQKIVKGNPN PRSYYRCTHG GCPVRKHVEK APDDVNNIVV TYEGKHNHDE PFRSNSIPVS  420
AISPSAATTE QPNTSTTTSD DRPPTITQKD ANGESDKETT LEFGGEKALE SAQTLLSIKT  480
NSDDMKNSVL KETSAAVPVQ NS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-253514111777Probable WRKY transcription factor 4
2lex_A1e-253514111777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016242.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0430070.0BT043007.1 Zea mays full-length cDNA clone ZM_BFc0076I12 mRNA, complete cds.
GenBankBT0552540.0BT055254.1 Zea mays full-length cDNA clone ZM_BFc0054H16 mRNA, complete cds.
GenBankEU9708070.0EU970807.1 Zea mays clone 351211 WRKY transcription factor 4 mRNA, complete cds.
GenBankKJ7275080.0KJ727508.1 Zea mays clone pUT5367 WRKY transcription factor (WRKY122) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973142.11e-144probable WRKY transcription factor 32
TrEMBLA0A1E5VC290.0A0A1E5VC29_9POAL; Putative WRKY transcription factor 20
STRINGPavir.Fb01409.1.p1e-146(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.16e-34WRKY DNA-binding protein 32