PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016212.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 349aa    MW: 36658.7 Da    PI: 6.5045
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016212.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.1e-31155211258
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                 +Dgy+WrKYGqK++k++++prsYY+Ct ++C +kk+ve+s++dp+++++tYeg H h
  Do016212.1 155 SDGYKWRKYGQKSIKNNPHPRSYYKCTGSRCGAKKHVEKSTDDPEMLIVTYEGPHLH 211
                 7******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-29151212IPR003657WRKY domain
SuperFamilySSF1182906.54E-26152213IPR003657WRKY domain
SMARTSM007741.3E-34154213IPR003657WRKY domain
PROSITE profilePS5081127.37155214IPR003657WRKY domain
PfamPF031061.3E-25156211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGDVLHPQAG AGDVALWPGE LDEQLIAELL SDDSLLLGAL HQQQVLPGGG DSSEHCTRDK  60
ADAPAPCDSG GGGGAAAEQE EVLPRPEAVS RALSSVYTGP TIRDIEKALS TSRPYPSWSS  120
RRYSPMHLGR FGAASRAPES KYTTKVRSCG GKTPSDGYKW RKYGQKSIKN NPHPRSYYKC  180
TGSRCGAKKH VEKSTDDPEM LIVTYEGPHL HGPQPLFPRR QWAFVDLSGA GAAAAAKTKQ  240
ARTPSPAASS AAARASDDGG GGRPANDQEM AYCDAEAAAV LPGNGRAEDA VAHRHLSLAA  300
TADSCDDGST ASVPAPRAAT VVLACDSPPT TWSCPDFPFA WSPEALLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-201562111974Probable WRKY transcription factor 4
2lex_A2e-201562111974Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016212.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970545.11e-156WRKY transcription factor WRKY24 isoform X1
TrEMBLA0A1E5UIZ90.0A0A1E5UIZ9_9POAL; Uncharacterized protein
STRINGSb03g039550.11e-139(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131442633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.14e-29WRKY DNA-binding protein 49