PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016190.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 274aa    MW: 29482.9 Da    PI: 7.1826
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016190.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.1e-19115166256
         AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr+++ +g+++AeIrd  +   k +r++lg+f taeeAa a+++a+++++g+
  Do016190.1 115 SYRGVRRRP-WGKFAAEIRDtRR---KGARVWLGTFATAEEAALAYDKAALRMRGP 166
                 69*******.**********332...34**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.06E-28114173No hitNo description
SMARTSM003801.6E-36115179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-31115173IPR001471AP2/ERF domain
PROSITE profilePS5103223.499115173IPR001471AP2/ERF domain
PfamPF008475.6E-15115165IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23115175IPR016177DNA-binding domain
PRINTSPR003671.0E-10116127IPR001471AP2/ERF domain
PRINTSPR003671.0E-10139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MAIGAPGSHQ PNEAAANILE NVWATIMTGS TTPASSSTAA SSEVGEEKPE AILQRLPSLG  60
RWISMGAEEW DELLLSGTAI TSDASGELLI ASPASQEDRH DHHRASSSKA VACKSYRGVR  120
RRPWGKFAAE IRDTRRKGAR VWLGTFATAE EAALAYDKAA LRMRGPRAHL NFPLDVVQRE  180
LVAGAANGCG EATRVLRRKR RRGNNNAADD TRSHGSVSAA GGCDQNMVSF ASCAKKDQGA  240
SMVHERSIMS DPGAVIEFED IGSEYWDYLF SPLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-27114176466ATERF1
3gcc_A1e-27114176466ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197201RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU6854121e-176KU685412.1 Saccharum spontaneum clone SES23E05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806647.11e-162ethylene-responsive transcription factor 15-like
TrEMBLA0A1E5VVA40.0A0A1E5VVA4_9POAL; Uncharacterized protein
STRINGPavir.J34156.1.p1e-154(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116162736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.12e-20ethylene responsive element binding factor 2