PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do016188.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | WOX | ||||||||
Protein Properties | Length: 489aa MW: 50895.5 Da PI: 8.0914 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47.3 | 3.5e-15 | 55 | 114 | 2 | 56 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 r+R+++ +eq+++Le F++ +p ++e++++ +l + +++V++WFqNr+ + k Do016188.1 55 RPRWNPRPEQIRILEGIFNSgVVNPPRDEIRRIRLQLqeygPVGDANVFYWFQNRKSRTK 114 89*****************99****************99999****************99 PP | |||||||
2 | Wus_type_Homeobox | 104.7 | 6.1e-34 | 54 | 116 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RW+P+peQi+iLe +++sG+++P+++ei+ri+ +L+eyG ++d+NVfyWFQNrk+R ++k Do016188.1 54 PRPRWNPRPEQIRILEGIFNSGVVNPPRDEIRRIRLQLQEYGPVGDANVFYWFQNRKSRTKHK 116 689**********************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.85E-11 | 51 | 119 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.831 | 51 | 116 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-5 | 53 | 120 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.21E-6 | 54 | 116 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-5 | 54 | 115 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 7.3E-13 | 55 | 115 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010075 | Biological Process | regulation of meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MASSNRHWPS MYRSSLACNF QQPQPDMNNG GGGGGGKASL MSSRCEESGR NPEPRPRWNP 60 RPEQIRILEG IFNSGVVNPP RDEIRRIRLQ LQEYGPVGDA NVFYWFQNRK SRTKHKLRAA 120 GQLQASGRTN LARACAPPPA PAPAPVTPPR HLLASPVAPT SSSSSSSDRS SGSSKSARPA 180 VGLPSPAAAA IQQGVLPATA MDLLSPTPAL AARQLYYHSQ LMAPSMPSIP ELIAASPEPF 240 LLQWQHGGHY LPATELGGVL GAHTHEPAPM HPAAVSPSVL LGLCNEALGQ DYRVDISCSK 300 GLGHGQYWNS SCGSDLSSSN KTDAVSAVIR DDEKARLGLL HYGFGGATAA AAAATSPHLA 360 APVPVQAAAD ANTAMPLPSS APSNAAAATS AAVLTDQLQG LLDAGLGLIG GTPPPSATVV 420 AVARDAVTCA ATATAQFSVP AMRLDVRLAF GEAAVLVRHT GEPVLVDESG VTVEPLQQDS 480 LYYVLMVTK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do016188.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM490242 | 1e-129 | AM490242.1 Zea mays mRNA for putative wuschel homeobox protein (wox9C gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961209.1 | 0.0 | WUSCHEL-related homeobox 12 | ||||
Swissprot | A3B6V0 | 1e-144 | WOX12_ORYSJ; WUSCHEL-related homeobox 12 | ||||
TrEMBL | A0A1E5VVA2 | 0.0 | A0A1E5VVA2_9POAL; WUSCHEL-related homeobox 12 | ||||
STRING | Si025013m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2666 | 34 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 5e-33 | homeobox-3 |
Publications ? help Back to Top | |||
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