PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016046.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bZIP
Protein Properties Length: 338aa    MW: 37505.4 Da    PI: 7.5028
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016046.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.91.4e-105389541
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41
                k+ rr+++NReAAr+sR+RKka++e+Le+   +L + 
  Do016046.1 53 KALRRLAQNREAARKSRLRKKAYVEQLENSRLKLAQL 89
                788*************************954444443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.7E-84496No hitNo description
SMARTSM003387.0E-749112IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.9795195IPR004827Basic-leucine zipper domain
PfamPF001701.1E-75391IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.03E-75396No hitNo description
PROSITE patternPS0003605671IPR004827Basic-leucine zipper domain
PfamPF141441.1E-31135211IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
LGRVYEMAYA SPGTDTSTDL DTDEKNQMLE LGQLASLTAS GSGDKSKDKL GQKALRRLAQ  60
NREAARKSRL RKKAYVEQLE NSRLKLAQLE QELQRAHQQG IFIPTPGDQP HSNSENGALA  120
FDVDYARWQE DHNKQINELR AALNAHVSDD DLRCIIDSIM AHYCEAFRLK GVAAKADAFH  180
VLSGLWKTPV ERCFLWLGGF RPSELLKLLA SHLEPLTEQQ LASICNLQRS SQQAEEDLSQ  240
GVKALQQSVA ETLASGSLCP AGSSGNAADC SGQMAVAIRK LSTLENFLQE ADNLRLQTLQ  300
QMQRVLTTRQ SARALLAISD YFSRLRALSS LWIARPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00492DAPTransfer from AT5G06950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016046.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807053.10.0transcription factor HBP-1b(c1)-like
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A1E5V7770.0A0A1E5V777_9POAL; Transcription factor HBP-1b(C1) (Fragment)
STRINGPavir.J04422.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-153TGACG motif-binding factor 6