PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do016044.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | LSD | ||||||||
Protein Properties | Length: 76aa MW: 7848.09 Da PI: 8.3305 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 52.9 | 6.1e-17 | 9 | 33 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+++ Do016044.1 9 CGQCQTVLMYPYGAPSVKCAICNFI 33 ***********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.1E-12 | 6 | 35 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.5E-15 | 9 | 33 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 76 aa Download sequence Send to blast |
VSSIAHVNCG QCQTVLMYPY GAPSVKCAIC NFITNVGGPP SQPQNVTVVV ENPMTVDDKG 60 KLVSNVVVGV TTGGKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do016044.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN983231 | 7e-50 | JN983231.1 Miscanthus sinensis clone MSIL000019 putative zinc finger LOL2 mRNA, complete cds. | |||
GenBank | KF314699 | 7e-50 | KF314699.1 Setaria italica clone Si18S 18S ribosomal RNA gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805781.1 | 6e-39 | protein LOL2-like isoform X2 | ||||
Swissprot | Q2QMB3 | 4e-38 | LOL2_ORYSJ; Protein LOL2 | ||||
TrEMBL | A0A1E5VG10 | 1e-46 | A0A1E5VG10_9POAL; Uncharacterized protein (Fragment) | ||||
STRING | OPUNC12G16710.1 | 6e-40 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.6 | 1e-15 | LSD family protein |
Publications ? help Back to Top | |||
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