PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016044.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family LSD
Protein Properties Length: 76aa    MW: 7848.09 Da    PI: 8.3305
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016044.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD152.96.1e-17933125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                Cg+C+t+L+YP+GApsV+Ca+C+++
  Do016044.1  9 CGQCQTVLMYPYGAPSVKCAICNFI 33
                ***********************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.1E-12635IPR005735Zinc finger, LSD1-type
PfamPF069435.5E-15933IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
VSSIAHVNCG QCQTVLMYPY GAPSVKCAIC NFITNVGGPP SQPQNVTVVV ENPMTVDDKG  60
KLVSNVVVGV TTGGKK
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016044.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9832317e-50JN983231.1 Miscanthus sinensis clone MSIL000019 putative zinc finger LOL2 mRNA, complete cds.
GenBankKF3146997e-50KF314699.1 Setaria italica clone Si18S 18S ribosomal RNA gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805781.16e-39protein LOL2-like isoform X2
SwissprotQ2QMB34e-38LOL2_ORYSJ; Protein LOL2
TrEMBLA0A1E5VG101e-46A0A1E5VG10_9POAL; Uncharacterized protein (Fragment)
STRINGOPUNC12G16710.16e-40(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.61e-15LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]