PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016010.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 493aa    MW: 51701.4 Da    PI: 6.1096
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016010.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS281.23.1e-861154842374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 + lL+ecA avs g+l+ a+ +L +l +++sp++ +  +Rl+ayft+A+aarl++s+ ++++ l+p  ++      + aa+++f++vsP+ +f++l++N
  Do016010.1 115 IALLMECAVAVSVGNLADANGMLLELAQMSSPYAsSCGERLVAYFTKAMAARLMSSWVGICAPLAPPCAA------VHAAFRAFYNVSPLARFAYLACN 207
                 689*******************************66779**********************888776665......678899***************** PP

        GRAS 100 qaIleavegeervHiiDfdisqG..lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL.. 194
                 qaIlea++g++ vHi+D+d+  G  lQW++Ll aLa+Rp+gpp lR+Tg+g     s+ +l+ tg++La +A++l +pfef + +akr  d++  +   
  Do016010.1 208 QAILEAFHGKRLVHIVDLDVVPGgaLQWLSLLPALAARPGGPPLLRVTGFGM----SASALHDTGNQLAGLASKLSMPFEFYA-IAKRPGDVDAAAAvp 301
                 ********************988447**************************....9**************************.588777776665523 PP

        GRAS 195 rvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..........adhnse.....sFlerflealeyysalfdsleaklpr 277
                 +  + gEalaV++    h ++d  ++       +++lv+ l+Pkv+++veqe               +      Fl+rf++al++ysalfdsl a+ p+
  Do016010.1 302 SR-RpGEALAVHWLQ--HAMYDAAGDDGA----TMRLVRWLEPKVLTLVEQErggapgvdggG----AvndhgHFLDRFVSALHHYSALFDSLGASRPA 389
                 34.36********99..788755665555....*******************76665544332....1555569*******************888888 PP

        GRAS 278 es.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaW 373
                 ++   r+ vE+ +lgrei nv+a  g +r  r + ++ W++ l + GF  +    +a    +l+   ++ + gy+v ++++  v lgWk+ pL++vS W
  Do016010.1 390 DEdASRHLVEHGVLGREIGNVLAVGGPSRSGRDK-FGCWQSELARHGFLHAGGAGRA----QLVAGACPaGLGYTVADDHDGTVrLGWKGTPLYAVSTW 483
                 77699***********************999987.*************888776665....556666666777****88666655************** PP

        GRAS 374 r 374
                 +
  Do016010.1 484 T 484
                 6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.29288466IPR005202Transcription factor GRAS
PfamPF035141.1E-83115484IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MSTGRGSDMQ DSLSLMQFHD PYLYSGGAGG ANLPLSHSFL PHHQGFVHTG DERCPGSKDV  60
PEFVDQATAE VISGEQELAA SKEVSEGGGD GAVEEQSGAA TAMGGEEEAH GVRMIALLME  120
CAVAVSVGNL ADANGMLLEL AQMSSPYASS CGERLVAYFT KAMAARLMSS WVGICAPLAP  180
PCAAVHAAFR AFYNVSPLAR FAYLACNQAI LEAFHGKRLV HIVDLDVVPG GALQWLSLLP  240
ALAARPGGPP LLRVTGFGMS ASALHDTGNQ LAGLASKLSM PFEFYAIAKR PGDVDAAAAV  300
PSRRPGEALA VHWLQHAMYD AAGDDGATMR LVRWLEPKVL TLVEQERGGA PGVDGGGAVN  360
DHGHFLDRFV SALHHYSALF DSLGASRPAD EDASRHLVEH GVLGREIGNV LAVGGPSRSG  420
RDKFGCWQSE LARHGFLHAG GAGRAQLVAG ACPAGLGYTV ADDHDGTVRL GWKGTPLYAV  480
STWTWCPSPH AQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-10210648411379Protein SCARECROW
5b3h_A1e-10210648410378Protein SCARECROW
5b3h_D1e-10210648410378Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269620.0KJ726962.1 Zea mays clone pUT3662 GRAS transcription factor (GRAS56) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806715.10.0protein SCARECROW-like
TrEMBLA0A1E5V1Z10.0A0A1E5V1Z1_9POAL; Protein SCARECROW
STRINGSi021890m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138132528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.12e-89GRAS family protein