PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015997.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 388aa    MW: 41469.4 Da    PI: 8.9425
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015997.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH406.8e-13318363655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR +i +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  Do015997.1 318 SIAERVRRTKISERIRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 363
                 689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.945312362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-16315374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-12316367No hitNo description
Gene3DG3DSA:4.10.280.109.4E-16317383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-13318368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-10318363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MYGSPVSKDL NLPVQPPMTS TGLLRYRSAP STLLGEVCED FLQPGPRDGS PDPGADNVFS  60
SFLADHQIRD KPPAPAPHAP AAAHLPATAA MASQQQQQQQ QQMMFHSQQQ HQQQQMATVE  120
SGLYRTVSSG MEAPTFAGSS SLIRQSSSPA GFLNHLNMDN GYGGMLRAGM GVGFRNGASA  180
AAAADSPSGG GGGGRLKGQL SFSSRQGSLM SQISEMGSDE LGGSSPEGAG GGGGRGYIPG  240
YPMSSGWEDS SSLMSENLSA GMKRPRDSWE PGQNRLATQF SLPKTSSEMA AIEKFLQFQD  300
AVPCKIRAKR GCATHPRSIA ERVRRTKISE RIRKLQELVP NMDKQTNTSD MLDLAVDYIK  360
DLQKQVKVLN ESRASCTCSA RKHQQFSG
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015997.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821227.10.0transcription factor bHLH130-like
TrEMBLA0A1E5V6560.0A0A1E5V656_9POAL; Transcription factor bHLH130
STRINGPavir.J14004.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-58bHLH family protein