PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015990.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 339aa    MW: 36514.9 Da    PI: 7.9505
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015990.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.85.8e-115982326
                S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                ++ C++++rtG C++G +CkF+H+
  Do015990.1 59 EPDCSYYMRTGMCRFGMTCKFNHP 82
                789********************8 PP
2zf-CCCH36.86.5e-12110134327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C +++rtG+Ck+G++CkF+H++
  Do015990.1 110 EKECAYYLRTGQCKFGSTCKFHHPQ 134
                 579********************97 PP
3zf-CCCH39.78.1e-13205230227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++C+f+++tG Ck+G+ CkF+H++
  Do015990.1 205 DQPECQFYMKTGDCKFGAVCKFHHPR 230
                 689*********************96 PP
4zf-CCCH37.15.2e-12250275126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +++++C+f++r+G Ck+G++CkF H+
  Do015990.1 250 PGEPICSFYSRYGMCKFGPNCKFDHP 275
                 5799*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.2535684IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-45683IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-75982IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-56184IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-46283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.69108135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6109136IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-5109134IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9110134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4113133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.53203231IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-5203230IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9205230IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-6206232IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-5209231IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6248275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.432249277IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-7249276IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8251275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4254274IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAAPSVGAGG GGVGAGEGSS SSAAATIGAH SVDQVAEAMW KMNLGEAVEL GPYPERVGEP  60
DCSYYMRTGM CRFGMTCKFN HPADRKLAVA AARMKGEYPQ RNGQPECQNE KECAYYLRTG  120
QCKFGSTCKF HHPQPSTMMV AAQIGSSSSD DQQRTPGAAQ YYTGSRQSGT AGMGDQGMFS  180
SYQAGSLPVG LYAVQRENVF PERPDQPECQ FYMKTGDCKF GAVCKFHHPR ERIIPSPNCA  240
LSSLGLPLRP GEPICSFYSR YGMCKFGPNC KFDHPTGTVM YGHASSPTSE VPTSRRMLAH  300
VASHPEVSPD NGSGRSRRIT HSDSQQIPSG ERSTEREAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9715670.0EU971567.1 Zea mays clone 367249 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703997.10.0zinc finger CCCH domain-containing protein 63 isoform X2
SwissprotQ2R4J41e-168C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A1E5UQ060.0A0A1E5UQ06_9POAL; Zinc finger CCCH domain-containing protein 63
STRINGORGLA11G0112800.11e-169(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.11e-103zinc finger nuclease 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]