PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015976.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 401aa    MW: 41502 Da    PI: 7.7847
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015976.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.23.8e-052913281254
                 HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 R +++ +++  L++l+ +      +K + a++L +++eYIk L
  Do015976.1 291 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 328
                 677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.992279328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-8289340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.00E-5289332No hitNo description
SuperFamilySSF474593.01E-11289346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MIHPAAAATA GSTSHGHGSD WWSTAVSCSP DQLPGFGAGW SAAADGNRSR SGNAASSESP  60
GSNSLATGGS SITFQEPAGV ADPGAVVGPQ PATGLAAGWN QPYYLDESGF HGYMSSSRGD  120
QVHLGLSSTS SNNSLMLQEP HDPNHQFLSN LGLELLSSPT SPSGGFRSSS LLRSLTEPSA  180
AVKPSSLGFQ QYQQPTMNPP SSIREAVQFT NNTPFWNPST GFAAAAEGAA NLGTARPPSA  240
QSRTASLAAK SALEGAGDSS SIIMKKANTD PTPLKKARTG TPSPLPTFKV RKEKLGDRIT  300
ALQQLVSPFG KTDTASVLHE TIEYIKFLHA QVGSLSAPYL KNRQQQVPHL KVSRDDGGEA  360
AAAKGGDLTG RGLCLVPISS TFAVASETPI DIWTPFGGAF R
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015976.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821266.10.0transcription factor bHLH112-like isoform X1
TrEMBLA0A1E5VW810.0A0A1E5VW81_9POAL; Transcription factor bHLH112
STRINGPavir.Fa02016.1.p0.0(Panicum virgatum)
STRINGPavir.Fb00501.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.36e-43bHLH family protein