PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do015938.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | TCP | ||||||||
Protein Properties | Length: 66aa MW: 7503.67 Da PI: 11.8898 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 59.8 | 1.1e-18 | 20 | 66 | 7 | 53 |
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlq 53 r ++hTkv+gR+R +R+ a+c ar+ L+ L +++d++t+ WLlq Do015938.1 20 RYRDRHTKVEGRGRHIRMAAPCTARVARLTGDLRHKSDGETVRWLLQ 66 778*******************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 15.527 | 21 | 66 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.8E-14 | 22 | 66 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 66 aa Download sequence Send to blast |
MPVEFLGSGL QLANPRPAPR YRDRHTKVEG RGRHIRMAAP CTARVARLTG DLRHKSDGET 60 VRWLLQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}. | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do015938.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034594 | 6e-53 | BT034594.1 Zea mays full-length cDNA clone ZM_BFb0002D09 mRNA, complete cds. | |||
GenBank | KJ726827 | 6e-53 | KJ726827.1 Zea mays clone pUT3366 TCP transcription factor (TCP19) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957394.1 | 7e-35 | transcription factor PCF2 | ||||
Swissprot | A2YXQ1 | 8e-21 | PCF2_ORYSI; Transcription factor PCF2 | ||||
Swissprot | Q6ZBH6 | 8e-21 | PCF2_ORYSJ; Transcription factor PCF2 | ||||
TrEMBL | A0A1E5V8P1 | 5e-41 | A0A1E5V8P1_9POAL; Uncharacterized protein | ||||
STRING | Si030591m | 2e-34 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3912 | 31 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51910.2 | 1e-19 | TCP family protein |
Publications ? help Back to Top | |||
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