PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do015915.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

GRAS

Protein Properties

Length: 484aa MW: 51587.7 Da PI: 7.3125

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do015915.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	283.4	6.4e-87	72	473	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l +lLl+ + a +sgd ++a a+L ++ +as g dp qR+aayf+ ALa+rl+r s +++a pp++t+ e+ a+++f+++sP+++f+h+ta Do015915.1 72 LMHLLLTSVAAGESGDVHAAAAALHEVYRRASFGGgDPAQRVAAYFADALASRLLR--SPVAAASPPTPTR----GVEFLAYTMFYQASPLYQFAHFTA 164 5799**************************9999****************..7777777777776....56668899************ PP GRAS 99 NqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpeg.................ppslRiTgvgspesgskeeleetgerLakfAeel.gvpfe 177 NqaI+ea+eg + +H++Dfd+s+G+QWp+L+q+L++ ++ p slRiTg+g s++el++t+ rL++fA+ + +v+fe Do015915.1 165 NQAIVEAFEGGgrRSLHVVDFDVSYGFQWPSLIQSLSDAAAAatstsggahdgddyckePVSLRITGLGT----SADELRQTEARLTRFASGCpNVRFE 259 *****9877889****************9887444556678899999999677*****....9***********98769 PP GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse.......sFlerflealeyysalfd 269 f+ +v +++ + e+++++ + +++Vnlv+ + ++s++++ ++L ++sl+P +v +ve+ + +s+ s+l f+ +l+y++a+fd Do015915.1 260 FEGVVDGPINSCRHERIKTDDNATVVVNLVFPAAQSS--RTSTREQACSTLARIRSLNPSLVFLVEKGGSGSSNatsrgrsSLLPPFTASLRYFAAVFD 356 8777*********************888886..555566679**************995443322355555************** PP GRAS 270 sleaklpreseerikvErellgreivnvva.....cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.....yrveee.sgs 357 sl++ lp++s er +Er +lg ei+n+ a + g+++ e+ + ++W+e++e+aGF+ ++ls+++++qaklll++ ++ g +rv e g Do015915.1 357 SLHECLPADSGERLAIERNYLGVEISNAMAsldhnHGGDDHMEEPSSSASWKEMMESAGFEGAKLSSRTVSQAKLLLKMKSGCGgsgggFRVIEGdGGR 455 *************************9444334678899*******************************9976332244669987661444 PP GRAS 358 lv.lgWkdrpLvsvSaWr 374 ++ lgW+d +L++++aWr Do015915.1 456 AMsLGWRDSALITTTAWR 473 456************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	48.773	46	446	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.2E-84	72	473	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MNLTLSLAIN GGGTGTGKKR KVLDDDVGDG GDNCGRVMRL LQARERMMAR LELDDSRRVA 60 PDDDGGSGGL RLMHLLLTSV AAGESGDVHA AAAALHEVYR RASFGGGDPA QRVAAYFADA 120 LASRLLRSPV AAASPPTPTR GVEFLAYTMF YQASPLYQFA HFTANQAIVE AFEGGGRRSL 180 HVVDFDVSYG FQWPSLIQSL SDAAAAATST SGGAHDGDDY CKEPVSLRIT GLGTSADELR 240 QTEARLTRFA SGCPNVRFEF EGVVDGPINS CRHERIKTDD NATVVVNLVF PAAQSSRTST 300 REQACSTLAR IRSLNPSLVF LVEKGGSGSS NATSRGRSSL LPPFTASLRY FAAVFDSLHE 360 CLPADSGERL AIERNYLGVE ISNAMASLDH NHGGDDHMEE PSSSASWKEM MESAGFEGAK 420 LSSRTVSQAK LLLKMKSGCG GSGGGFRVIE GDGGRAMSLG WRDSALITTT AWRRRRRSVS 480 KTSS

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MNLTLSLAIN GGGTGTGKKR KVLDDDVGDG GDNCGRVMRL LQARERMMAR LELDDSRRVA  60
PDDDGGSGGL RLMHLLLTSV AAGESGDVHA AAAALHEVYR RASFGGGDPA QRVAAYFADA  120
LASRLLRSPV AAASPPTPTR GVEFLAYTMF YQASPLYQFA HFTANQAIVE AFEGGGRRSL  180
HVVDFDVSYG FQWPSLIQSL SDAAAAATST SGGAHDGDDY CKEPVSLRIT GLGTSADELR  240
QTEARLTRFA SGCPNVRFEF EGVVDGPINS CRHERIKTDD NATVVVNLVF PAAQSSRTST  300
REQACSTLAR IRSLNPSLVF LVEKGGSGSS NATSRGRSSL LPPFTASLRY FAAVFDSLHE  360
CLPADSGERL AIERNYLGVE ISNAMASLDH NHGGDDHMEE PSSSASWKEM MESAGFEGAK  420
LSSRTVSQAK LLLKMKSGCG GSGGGFRVIE GDGGRAMSLG WRDSALITTT AWRRRRRSVS  480
KTSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	3e-45	107	475	52	380	Protein SCARECROW
5b3h_D	3e-45	107	475	52	380	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do015915.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004975641.1	0.0	DELLA protein DWARF8
TrEMBL	A0A1E5VCV6	0.0	A0A1E5VCV6_9POAL; Scarecrow-like protein 23
STRING	Si009972m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11649	30	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41920.1	5e-44	GRAS family protein