PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015830.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 270aa    MW: 28934.6 Da    PI: 4.3924
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015830.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-172368148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+++++E++l+v +++ lG++ W+ Ia++++ gRt++++k++w++yl
       Do015830.1 23 RGSFSQQEEDLIVALHEILGNR-WSQIASHLP-GRTDNEIKNFWNSYL 68
                     899*******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.077117IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.5E-10329IPR009057Homeodomain-like
SuperFamilySSF466892.17E-21477IPR009057Homeodomain-like
PROSITE profilePS5129426.7961872IPR017930Myb domain
SMARTSM007172.0E-172270IPR001005SANT/Myb domain
PfamPF002495.6E-162368IPR001005SANT/Myb domain
CDDcd001674.16E-132568No hitNo description
Gene3DG3DSA:1.10.10.609.4E-223069IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
GLQRCGKSCR LRWINYLRPD LKRGSFSQQE EDLIVALHEI LGNRWSQIAS HLPGRTDNEI  60
KNFWNSYLKK KLRLRGIDPS THKPIASAGG AAEAGAALPD ATRDHDSKPA AADSADGLAQ  120
KQPAVFDPFP VSDFGFDLGA TSVAALYGGQ YDDGKASPDD AGGFVADYSS VLDVSENLGY  180
GESSSNSSNW NCAEMSSAVL DSEVLHWAGS SAGGGATKPE PYTELEQQYS GGYSGSQAAV  240
DDDDALELKF SLPCGQEQSL AHLDFNLEYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-2247240108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0635971e-118BT063597.1 Zea mays full-length cDNA clone ZM_BFc0084D02 mRNA, complete cds.
GenBankKJ7274941e-118KJ727494.1 Zea mays clone pUT5353 MYB transcription factor (MYB99) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961344.11e-152myb-related protein Hv33
RefseqXP_025807707.11e-152myb-related protein Hv33-like
SwissprotP200271e-85MYB3_HORVU; Myb-related protein Hv33
TrEMBLA0A1E5VGA10.0A0A1E5VGA1_9POAL; Myb-related protein Hv33 (Fragment)
STRINGPavir.J19191.1.p1e-159(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.37e-49myb domain protein 55