PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do015775.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | YABBY | ||||||||
Protein Properties | Length: 229aa MW: 23587.8 Da PI: 8.7857 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 84.1 | 4e-26 | 47 | 96 | 5 | 54 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas 54 +seq+Cyv+C fC+t+l+vsvP++slfk+vtvrCGhC+sllsvn++ Do015775.1 47 PTSEQLCYVHCHFCDTVLVVSVPTSSLFKTVTVRCGHCSSLLSVNMRGLL 96 689****************************************9998654 PP | |||||||
2 | YABBY | 38.2 | 5.2e-12 | 199 | 229 | 105 | 134 |
YABBY 105 edeevprvpp.virPPekrqrvPsaynrfik 134 ++e +pr+ p v+rPPekrqrvPsaynrfik Do015775.1 199 SKEPSPRTNPvVNRPPEKRQRVPSAYNRFIK 229 566778888879******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.0E-34 | 48 | 229 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MSSSSSSSSA ASAAAVFPPS PQAPPPPLLV ENLPPLHQLT PVAAAAPTSE QLCYVHCHFC 60 DTVLVVSVPT SSLFKTVTVR CGHCSSLLSV NMRGLLFPGT PTITAAAAAT DAVTASTTTT 120 ITTAPPPAAT SVNNGQFHFP HSLNLAPNPP HQSLLDEISS ANPNLQLLEQ HGLGGLIPGG 180 RNAAAPPPTP QPAAAGKGSK EPSPRTNPVV NRPPEKRQRV PSAYNRFIK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do015775.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU971153 | 1e-160 | EU971153.1 Zea mays clone 358521 axial regulator YABBY1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796914.1 | 1e-108 | protein YABBY 3-like | ||||
Swissprot | Q8L556 | 9e-49 | YAB3_ORYSJ; Protein YABBY 3 | ||||
TrEMBL | A0A1E5VBS8 | 1e-159 | A0A1E5VBS8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia02088.1.p | 1e-105 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22855 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00180.1 | 4e-14 | YABBY family protein |
Publications ? help Back to Top | |||
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