PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015741.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 294aa    MW: 32457.6 Da    PI: 6.9423
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015741.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.4e-093985347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      WT+ E + + +a +q   +   +W+++a++++ ++t+ ++ ++++++
       Do015741.1 39 EWTAAENKVFEEALAQIDRNaldRWEKVAAMLP-RKTAIDVENHYHDL 85
                     7*****************99*************.***********976 PP
2Myb_DNA-binding47.54.1e-15144188347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G g+W+ I+r+  ++Rt+ q+ s+ qky
       Do015741.1 144 PWTEEEHKLFLMGLKKYGRGDWRNISRKYVTTRTPTQVASHAQKY 188
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.3643588IPR017884SANT domain
SuperFamilySSF466891.22E-93585IPR009057Homeodomain-like
SMARTSM007173.2E-63688IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-43984IPR009057Homeodomain-like
CDDcd001672.81E-63985No hitNo description
PfamPF002495.7E-63985IPR001005SANT/Myb domain
PROSITE profilePS5129418.021137193IPR017930Myb domain
SuperFamilySSF466891.29E-17139193IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-17140191IPR006447Myb domain, plants
SMARTSM007176.0E-13141191IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-11141187IPR009057Homeodomain-like
PfamPF002491.4E-12144188IPR001005SANT/Myb domain
CDDcd001671.23E-11144189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MMAEAWTQVL LPPMAPCFSV QPSCFWQDRH AGFAGRGDEW TAAENKVFEE ALAQIDRNAL  60
DRWEKVAAML PRKTAIDVEN HYHDLENDVG YIEAGLVPFP HYSSSSPSSA FTLEDWDGGD  120
GGFRRGYCLK RARGPDQERK KGVPWTEEEH KLFLMGLKKY GRGDWRNISR KYVTTRTPTQ  180
VASHAQKYFI RLNSGGKDKR RSSIHDITTV NLPDEDRGNS SPSPPSAVTT NPSVADQFGA  240
LVDVKPFMAP LPGAALGVAH PYGAVKLEPK SALVAAGLGF DDSCFLQMQC AGQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1431105276RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015741.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794441e-168HF679444.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB38 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815076.10.0transcription factor DIVARICATA-like isoform X1
SwissprotQ8S9H76e-76DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1E5VWW80.0A0A1E5VWW8_9POAL; Transcription factor DIVARICATA
STRINGSi002423m1e-178(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.12e-76Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]