PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do015678.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MYB | ||||||||
Protein Properties | Length: 407aa MW: 44108.2 Da PI: 7.8115 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.4 | 5.8e-17 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+llvd v+++G g+W+++ r+ g+ R++k+c++rw ++l Do015678.1 17 KGPWTQAEDKLLVDHVRRHGEGNWNAVRRETGLQRCGKSCRLRWANHL 64 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 46.8 | 6.8e-15 | 70 | 113 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ ++++++ + G++ W++I+++++ gRt++++k++w++ Do015678.1 70 KGPFSPEEERQILRLHGLIGNK-WARISSYLP-GRTDNEIKNYWNT 113 79********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.075 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.73E-31 | 14 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-13 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-15 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-22 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.93E-12 | 19 | 64 | No hit | No description |
PROSITE pattern | PS00175 | 0 | 32 | 41 | IPR001345 | Phosphoglycerate/bisphosphoglycerate mutase, active site |
PROSITE profile | PS51294 | 25.271 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-15 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-14 | 70 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.20E-11 | 72 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-24 | 72 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MARSGGGVDG GGGGLKKGPW TQAEDKLLVD HVRRHGEGNW NAVRRETGLQ RCGKSCRLRW 60 ANHLRPNLRK GPFSPEEERQ ILRLHGLIGN KWARISSYLP GRTDNEIKNY WNTRLKRRQR 120 AGLPLYPPDI EREIALLRAQ NINPFADADG NGNANGSLPP PLLYDASNPF ARPPTVPSPS 180 GSATASHSPL INQNYPLLNQ MQGMQVFHLA SQQSPQPVFH QDSGAALGGH GSFVYSGLPP 240 LPTRPQELPS NQFDTSSSGG GGAGLLESLL LGDDHLLPRH NTTMVKVSSM PALTYREPAG 300 SRLPVHGAGS DSDDTSHYLP GEDMHHGAKW NFTFEDVKPA KRRTPSEAGI SDMFGIAPGS 360 EWFSTCGGST APSPGPSSAV TDDEFNLDMQ QFMSLLPLSI DGHSWNA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-29 | 15 | 118 | 5 | 107 | B-MYB |
1h8a_C | 9e-29 | 15 | 118 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do015678.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038723 | 1e-163 | BT038723.1 Zea mays full-length cDNA clone ZM_BFb0313M23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813892.1 | 0.0 | transcription factor MYB97-like | ||||
TrEMBL | A0A1E5VDY5 | 0.0 | A0A1E5VDY5_9POAL; Transcription factor GAMYB | ||||
STRING | Si006555m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12397 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.1 | 1e-58 | myb domain protein 33 |