PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015678.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 407aa    MW: 44108.2 Da    PI: 7.8115
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015678.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.8e-171764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed+llvd v+++G g+W+++ r+ g+ R++k+c++rw ++l
       Do015678.1 17 KGPWTQAEDKLLVDHVRRHGEGNWNAVRRETGLQRCGKSCRLRWANHL 64
                     79******************************************9986 PP

2Myb_DNA-binding46.86.8e-1570113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE+ ++++++ + G++ W++I+++++ gRt++++k++w++
       Do015678.1  70 KGPFSPEEERQILRLHGLIGNK-WARISSYLP-GRTDNEIKNYWNT 113
                      79********************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0751264IPR017930Myb domain
SuperFamilySSF466899.73E-3114111IPR009057Homeodomain-like
SMARTSM007171.6E-131666IPR001005SANT/Myb domain
PfamPF002496.5E-151764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-221871IPR009057Homeodomain-like
CDDcd001677.93E-121964No hitNo description
PROSITE patternPS0017503241IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129425.27165119IPR017930Myb domain
SMARTSM007171.7E-1569117IPR001005SANT/Myb domain
PfamPF002492.6E-1470113IPR001005SANT/Myb domain
CDDcd001673.20E-1172115No hitNo description
Gene3DG3DSA:1.10.10.603.3E-2472118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MARSGGGVDG GGGGLKKGPW TQAEDKLLVD HVRRHGEGNW NAVRRETGLQ RCGKSCRLRW  60
ANHLRPNLRK GPFSPEEERQ ILRLHGLIGN KWARISSYLP GRTDNEIKNY WNTRLKRRQR  120
AGLPLYPPDI EREIALLRAQ NINPFADADG NGNANGSLPP PLLYDASNPF ARPPTVPSPS  180
GSATASHSPL INQNYPLLNQ MQGMQVFHLA SQQSPQPVFH QDSGAALGGH GSFVYSGLPP  240
LPTRPQELPS NQFDTSSSGG GGAGLLESLL LGDDHLLPRH NTTMVKVSSM PALTYREPAG  300
SRLPVHGAGS DSDDTSHYLP GEDMHHGAKW NFTFEDVKPA KRRTPSEAGI SDMFGIAPGS  360
EWFSTCGGST APSPGPSSAV TDDEFNLDMQ QFMSLLPLSI DGHSWNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29151185107B-MYB
1h8a_C9e-291511825127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015678.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0387231e-163BT038723.1 Zea mays full-length cDNA clone ZM_BFb0313M23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813892.10.0transcription factor MYB97-like
TrEMBLA0A1E5VDY50.0A0A1E5VDY5_9POAL; Transcription factor GAMYB
STRINGSi006555m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123972632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.11e-58myb domain protein 33