PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015588.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 300aa    MW: 32671.1 Da    PI: 6.3161
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015588.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.9e-091857148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ + ++G g+W++        R++k+c++rw +yl
       Do015588.1 18 KGLWSPEEDEKLYNHIIRYGVGCWSS--------RCGKSCRLRWINYL 57
                     678**********************9........899*********97 PP
2Myb_DNA-binding50.83.9e-1663107147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++++E++ +v +++ lG++ W+ Ia++++ gRt++++k++w++ 
       Do015588.1  63 RGSFSQQEEDAIVSLHEILGNR-WSQIASHLP-GRTDNEIKNFWNSC 107
                      899*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.0661357IPR017930Myb domain
SuperFamilySSF466897.11E-2516104IPR009057Homeodomain-like
SMARTSM007175.1E-71759IPR001005SANT/Myb domain
PfamPF002494.4E-91857IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-161964IPR009057Homeodomain-like
CDDcd001672.19E-92157No hitNo description
PROSITE profilePS5129425.35458112IPR017930Myb domain
SMARTSM007179.0E-1662110IPR001005SANT/Myb domain
PfamPF002491.5E-1463107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-2665112IPR009057Homeodomain-like
CDDcd001679.21E-1165105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGRHAGSAAA GVQQKLRKGL WSPEEDEKLY NHIIRYGVGC WSSRCGKSCR LRWINYLRPD  60
LKRGSFSQQE EDAIVSLHEI LGNRWSQIAS HLPGRTDNEI KNFWNSCLKK KLRQRGIDPS  120
THKPISASAA AALEEPAPSH EHKPPAAVDG GSGFALKQQH QQAVFDPFPL TDSFGGGFDA  180
AGAALYGHLG VGGGKQQDGG GFVDYSSVLD VSENLGYGES SSNSSNWNCA PEANTLDGEA  240
SLNWASESKA EPFAGYGGEE QSLEHKFLLP CHGQREHSLP HFDFDISRGA VVGDFNLEFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-27161125108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107113LKKKLRQ
2192200GGKQQDGGG
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015588.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9616180.0EU961618.1 Zea mays clone 237078 myb-related protein Hv33 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969673.11e-165myb-related protein Hv33
SwissprotP200272e-97MYB3_HORVU; Myb-related protein Hv33
TrEMBLA0A1E5VG250.0A0A1E5VG25_9POAL; Myb-related protein Hv33
STRINGSi005548m1e-164(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.13e-62myb domain protein 86