PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do015490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 135aa MW: 15013 Da PI: 11.8671 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.3 | 6e-16 | 40 | 72 | 1 | 33 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCda 33 krienk+ rqvtf kRrn + KKA+ LSvLCda Do015490.1 40 KRIENKIYRQVTFGKRRNSLRKKAYDLSVLCDA 72 79******************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 19.806 | 32 | 72 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.3E-13 | 32 | 85 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.89E-16 | 33 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-14 | 34 | 54 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-13 | 41 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-14 | 54 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
LITSASRVPR RLPPCRKWNP NHSSSGGSCR RHGEGRVELK RIENKIYRQV TFGKRRNSLR 60 KKAYDLSVLC DATSRSRSSS SSSSSISNGL PPQSKRVLHR AEECIRLHAR LHSAHSCVPA 120 SSGTDMIFGS RSSQI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do015490.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033398 | 7e-42 | BT033398.1 Zea mays full-length cDNA clone ZM_BFb0100K01 mRNA, complete cds. | |||
GenBank | BT087942 | 7e-42 | BT087942.1 Zea mays full-length cDNA clone ZM_BFb0323H23 mRNA, complete cds. | |||
GenBank | KJ728337 | 7e-42 | KJ728337.1 Zea mays clone pUT6618 MADS transcription factor (MADS49) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1E5VA59 | 3e-91 | A0A1E5VA59_9POAL; Uncharacterized protein (Fragment) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.3 | 8e-15 | MIKC_MADS family protein |