PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do015366.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | C2H2 | ||||||||
Protein Properties | Length: 199aa MW: 21420.2 Da PI: 7.7444 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00029 | 170 | 192 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+ +F ++ + H+++H Do015366.1 170 YQCKICPATFVSSKAYGGHMSSH 192 9*******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.2E-5 | 170 | 194 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.411 | 170 | 197 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 172 | 192 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
LHEALVGTAA MQIMDPSSQS QPTNQPIFHA PQEPSKMPVH HNSTLPNCTD EPLPLSSPFP 60 HTVPTTVTPV SSIPFQARFA ANSIYQQQTL SSEHNFLTTP VSDYLSSSDR MAIMSMDAPS 120 ITSLLQGDPV AVLHAHLNII QGADLGPIFG NPTQSTSSSS MKNERGGHIY QCKICPATFV 180 SSKAYGGHMS SHSKAKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do015366.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1E5VU64 | 1e-143 | A0A1E5VU64_9POAL; Uncharacterized protein (Fragment) | ||||
STRING | Si003986m | 1e-100 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11492 | 6 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 9e-07 | C2H2 family protein |