PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do015330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NAC | ||||||||
Protein Properties | Length: 413aa MW: 44151.4 Da PI: 8.696 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.3 | 7.4e-50 | 44 | 169 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + +++++ + Do015330.1 44 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMIRAENNRPI 141 79***************************.89***************888889********************************************** PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 glkktLvfy+g+apkg++++W+m+eyrl Do015330.1 142 GLKKTLVFYSGKAPKGVRSSWIMNEYRL 169 **************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-56 | 43 | 189 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.39 | 43 | 190 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-24 | 45 | 169 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MSGRHENGHG AAAAAAAAAA AVGGGGGGRA GDGDGDAHED DLVMPGFRFH PTEEELIEFY 60 LRRKVEGKRF NVELITFLDL YRYDPWELPA MAAIGEKEWF FYVPRDRKYR NGDRPNRVTA 120 SGYWKATGAD RMIRAENNRP IGLKKTLVFY SGKAPKGVRS SWIMNEYRLP PDDTDRYHKT 180 EISLCRVYKR TGIDDGHGHG HPSSARSTPS RGGATAQQAD IKQASSSSTP TPPTTPSKMM 240 HLLHGECTSP PAIKDHAAAH NKPAAAQRQL PTKPCNGGYL LSTASSATAA AGDPLQVGTT 300 AMPSSYEQSR NASAFASTYS LLSLMNAASS MGGSSAAAID ELSSLVGHGP PAYFNHQAGG 360 VHSHSFLPLP TPSSQPMAVG TLPMSLAAIS DKIWEWNPIP DAAARDYSIA GFK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-53 | 45 | 190 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-53 | 45 | 190 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-53 | 45 | 190 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-53 | 45 | 190 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-53 | 45 | 190 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-53 | 45 | 190 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00257 | DAP | Transfer from AT2G02450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do015330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039864 | 0.0 | BT039864.1 Zea mays full-length cDNA clone ZM_BFc0047I12 mRNA, complete cds. | |||
GenBank | EU957131 | 0.0 | EU957131.1 Zea mays clone 1583712 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970843.1 | 0.0 | NAC domain-containing protein 35 | ||||
TrEMBL | A0A1E5WH59 | 0.0 | A0A1E5WH59_9POAL; NAC domain-containing protein 35 | ||||
STRING | Si001651m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2826 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 1e-102 | NAC domain containing protein 35 |