PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do015310.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

GeBP

Protein Properties

Length: 687aa MW: 73732.1 Da PI: 5.62

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do015310.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	29.7	1.7e-09	513	599	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++r ws++D + +L +l+d ++++g d d + + + + +++++ l +Kir+LK ++++ ++ + + + + fels +W Do015310.1 513 VERSWSQDDTLKILNALVDHAQSHGGALLDSSDLLANLTFD--KTDANEDKLNDKIRKLKARYRRWCSQ------GRPTDDLGRRLFELSAVLWS 599 6899******************97666666655555555..57899**************99988......34466777888999988886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	8.6E-10	514	599	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence Send to blast
MVATRSTRRP SSDDSEELGL EGAKTAPSSP EDEGSEAEEG RDTEAAEEEE SDKAGDARPV 60 KHAPAAAAPK PNETPKQAKK PSPPPPEDAG AQGSGGASPV RDAPLVELEA DAAHPPRKKS 120 KAKKTTKRVK RPPPPSHEER AQDQVEESGD PSLVSKAPAG ETAAVSPRRA IVVSADHNKR 180 GASPPSPKRA KRGAAPTQED EEQAEKRAAG ADDNGTSKAA AESGAPADKV NRKRMLRKVL 240 AKPPSALEEE QQGEEDAEQE HAGNILLPQQ KDGAHAALED EERAQVGVEF GDPSLVTKAP 300 ADKTAAMSPW REIVVPPYHN RSGTTSPAPK RAKRGATLSQ EEEEQAKKHT AGADDDGISK 360 AAAGTGALAD KVNRKKKGKK KKVRKVLVNP PQPDCTELGL TGNREGVPDI GNTSSPLEKD 420 IAQEKEQQGE TVEHGHAGST SLPQVNHGAH EEEHQGNEDA EQEHVDNTSL SQQKDGAQED 480 EDTGVVVSGE ALPGRNALSR KLRTSKGEKK PAVERSWSQD DTLKILNALV DHAQSHGGAL 540 LDSSDLLANL TFDKTDANED KLNDKIRKLK ARYRRWCSQG RPTDDLGRRL FELSAVLWSQ 600 VDDGVRVEVD FSQRSSLYPY LAEEVKVYAE THSSGSLVMA AFTTIGDDKA RRLDAMCKKQ 660 RVDAYNLELS QANLTKAMLS AFSSEIN

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence Send to blast

MVATRSTRRP SSDDSEELGL EGAKTAPSSP EDEGSEAEEG RDTEAAEEEE SDKAGDARPV  60
KHAPAAAAPK PNETPKQAKK PSPPPPEDAG AQGSGGASPV RDAPLVELEA DAAHPPRKKS  120
KAKKTTKRVK RPPPPSHEER AQDQVEESGD PSLVSKAPAG ETAAVSPRRA IVVSADHNKR  180
GASPPSPKRA KRGAAPTQED EEQAEKRAAG ADDNGTSKAA AESGAPADKV NRKRMLRKVL  240
AKPPSALEEE QQGEEDAEQE HAGNILLPQQ KDGAHAALED EERAQVGVEF GDPSLVTKAP  300
ADKTAAMSPW REIVVPPYHN RSGTTSPAPK RAKRGATLSQ EEEEQAKKHT AGADDDGISK  360
AAAGTGALAD KVNRKKKGKK KKVRKVLVNP PQPDCTELGL TGNREGVPDI GNTSSPLEKD  420
IAQEKEQQGE TVEHGHAGST SLPQVNHGAH EEEHQGNEDA EQEHVDNTSL SQQKDGAQED  480
EDTGVVVSGE ALPGRNALSR KLRTSKGEKK PAVERSWSQD DTLKILNALV DHAQSHGGAL  540
LDSSDLLANL TFDKTDANED KLNDKIRKLK ARYRRWCSQG RPTDDLGRRL FELSAVLWSQ  600
VDDGVRVEVD FSQRSSLYPY LAEEVKVYAE THSSGSLVMA AFTTIGDDKA RRLDAMCKKQ  660
RVDAYNLELS QANLTKAMLS AFSSEIN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	372	379	NRKKKGKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do015310.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004977672.3	1e-120	triadin
TrEMBL	A0A1E5W107	0.0	A0A1E5W107_9POAL; Uncharacterized protein
STRING	Si012012m	1e-120	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22803	2	2